Sulfuritalea hydrogenivorans: SUTH_01750
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Entry
SUTH_01750 CDS
T03591
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
shd
Sulfuritalea hydrogenivorans
Pathway
shd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
shd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SUTH_01750 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shd03400
]
SUTH_01750 (mfd)
Enzymes [BR:
shd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SUTH_01750 (mfd)
DNA repair and recombination proteins [BR:
shd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SUTH_01750 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
SNF2-rel_dom
Glyco_tran_WecG
CTE_SPB4
AAA_22
ERCC3_RAD25_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
BAO29542
UniProt:
W0SEZ9
LinkDB
All DBs
Position
complement(1772871..1776299)
Genome browser
AA seq
1142 aa
AA seq
DB search
MNPLLSLPALPKPGQRLDLPPLAASADALALAQLAQPGRLLAVVTASPLEAQRLAEEIAW
FAPALRVHLLPDWETLPYDSFSPHQDLISERLATLYAVSRNECEVLIAAASTAITRLSPP
SFLAGHTFFMKKGERLDLDKLRAQLTVAGYQHVTQVVAAGEYSVRGGLIDLFPMGTQLPY
RIELFDDEVETIRSFDVDTQRTLYPVPEIRLLPAREFPSGDAGRTAFRQRFREAFEGDAS
RISLYKDVSNGILPAGIEYYLPLFFETTATLFDYLPQDATLLLHGDVAGAIAEFWTDLQG
RYRMLGGDRSRPVLPPGELFLRDEEFFVTAKPLPQLNLKPGVGAGGTATALPALAVDRKA
DDPLAALRGFLGLHAGRVLLLAESPGRRQTLADYLAEYSLSALPCDDFAAFLAGDDAFML
GVGPLSGGFLLDGFAIVTENELYAATARPRGRHSDARRANLEGWLRDLSELKVGDPVVHE
SHGIGRYLGLLHMDFGEGDTEFLHLEYANGAKLYVPVAQLQVISRYSGADPEAIQLHTLG
SGQWEKAKKKAAEQVHDTAAELLHLYAQRALREGHQFTFKQHDLEAFADGFGFEETPDQQ
TAINAVIEDMKSGKPMDRLVCGDVGFGKTEVAMRAAFVAVADGKQVAILCPTTLLAEQHY
QNFTDRFASWPVKIAEISRFKSAAEQDEAVALLAQGRIDILIGTHRLLQKDVKFERLGLI
IIDEEHRFGVRQKEALKALRAQVDVLTLTATPIPRTLGLSLEGLRDFSVIATPPQKRLAI
KTFVSKWSNGQVREACLREFKRGGQVYFLHNEVDTIENMKERLQTLLPEARIVIGHGQLP
ERELERVMREFTQQKHNLLLCSTIIETGIDNPHANTIVINRADKFGLAQLHQLRGRVGRS
HHQAYAYLLTHEDAKPTAQAKRRLEAIQAMEELGSGFFLAMHDLEIRGAGEVLGESQSGE
IHEIGFAMYTNMLNAAVRALKAGEKVPDLTQPLSITSEINLRVPALLTNDYCPDVHERLT
LYKRLANCDSEDELRAMQEELIDRYGEMPAQTMALMETHRLRLAGRALGLAKLDAGPAAI
QLQFVPNPPIDPANIIRLLQSDRSFKLAGQDKLLWQKPSANLKERVDAVRALFMKLGPEN
NK
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgaacccgctgctgtccctccccgccctgcccaagcccggccaacgcctcgacctgccg
ccgctggcggccagcgccgacgcgctggcgctggcgcaacttgcgcagccgggccgcctg
ctggcggtggtgacggccagcccgctcgaagcgcagcgcctggctgaggaaatcgcctgg
ttcgccccggccctgcgcgtgcatctgctgccggactgggagaccctgccctacgacagc
ttctcgccgcaccaggatttgatctcggagcggctggcgacgctctacgcggtctcgcgc
aatgagtgcgaggtactgatcgcggcggcctcgaccgcgatcacgcgcctctcgccgccc
tcctttctcgccggccacactttcttcatgaagaagggcgagcggctcgacctcgacaag
ctgcgtgcccagctcaccgtcgccggctaccagcacgtgacccaggtcgtcgccgccggc
gagtacagcgtgcgcggcgggctgatcgacctgttcccgatgggcacgcaactcccttac
cgcatcgaactcttcgacgacgaagtggaaaccatccgcagcttcgatgtcgatactcag
cgcacgctctacccggtgccggagattcgcctgctgccggcgcgtgagttcccctccggc
gacgccggacgcactgccttccgccagcgctttcgcgaagccttcgagggcgatgcctcg
cgcatcagcctctacaaggatgtctcgaacggcatcctgccggccggcatcgagtattac
ctgccgctgttcttcgaaactacggcgacgctgttcgactacctgccgcaggacgcaaca
ctgctgctgcatggcgacgtcgccggcgcgattgccgagttctggaccgatctgcaaggc
cgctacaggatgctcggcggtgatcgctcgcgcccggtgctgccgcccggcgaactgttc
ctgcgcgacgaggaattcttcgtcaccgcgaaaccgctgccgcaattgaacctgaagccg
ggagtcggcgccggcggtacggcgactgccttgccggcgctggccgtcgaccgcaaggcc
gacgatcctctggccgccttgcgcggctttctcggcctccatgccggtcgcgtgctgttg
ctggccgaatcgcccggacggcggcagacgctcgccgactacctcgccgaatacagtttg
tccgctctcccctgcgacgacttcgccgccttcctcgccggtgacgatgccttcatgctc
ggggtcggtccgctctccggcggcttcctgctcgacggcttcgcgatcgtcaccgagaac
gagctgtatgccgccacggcgcgcccgcgcggtcgccactccgatgcccgccgcgccaat
ctcgaaggctggctgcgcgacctgtccgagctgaaggtgggcgaccctgtggtacatgaa
agccacggcatcggccgttacctgggcctgctgcacatggatttcggcgagggcgacacg
gaattcctgcacctcgaatatgccaatggcgccaagctctatgtgcccgtcgcgcaatta
caggtcatctcgcgctacagcggcgccgacccggaagccatccaacttcacacgctgggc
tcgggccagtgggagaaggccaagaagaaggccgccgagcaggtgcacgacaccgccgcc
gaactgctgcacctctatgcgcagcgcgcgctgcgcgaaggccaccagttcactttcaag
cagcacgacctggaagccttcgccgacggcttcggcttcgaggaaacgcccgaccagcag
accgcgatcaatgccgtgatcgaagacatgaaatccggcaagccgatggatcgcctggtc
tgcggcgatgtcggcttcggcaagaccgaggtcgcgatgcgcgccgccttcgtcgccgtg
gccgacggcaagcaggtcgcgatcctgtgccctaccacgctgctggccgagcagcactat
cagaactttaccgaccgcttcgccagctggcccgtgaagatcgccgaaatctcgcgcttc
aagtccgccgcggaacaggatgaagccgtggcactgctggcccagggcaggatcgacatc
ctgatcggcacccatcgcctgctgcagaaggacgtcaagttcgagcggctcggcctcatc
atcatcgacgaggaacaccgtttcggcgtgcgccagaaggaggcgctgaaggcgctgcgc
gcgcaggtcgacgtgctgacgctgaccgcgacgccgatcccgcgcacgctggggctttcg
ctggaaggcctgcgcgatttttcggtgatcgcgacgccgccgcaaaagcgcctggcgatc
aagaccttcgtcagcaagtggtccaacggccaggtgcgcgaagcctgcctgcgtgagttc
aaacgtggcggccaggtctatttcctgcacaacgaagtcgataccatcgaaaacatgaag
gagcggctgcaaaccctgctgcccgaggcgcgcatcgtgatcggccacggccagctgccc
gagcgcgagctggaacgcgtaatgcgcgaattcacccagcagaagcacaacctgctgctg
tgctcgaccatcatcgagaccggcatcgacaacccgcatgccaacaccatcgtcatcaac
cgcgccgacaagttcggcctggcgcaattgcaccagttgcgcggccgcgtcggccgttcg
caccaccaggcctatgcctacctgctgacccacgaggacgccaagccgacggcgcaggcc
aagcgtcgcctcgaagcgatccaggccatggaggagcttggctcgggcttcttcctcgcc
atgcacgacctcgaaatccgtggcgccggcgaggtgctcggcgaatcgcagagcggcgaa
atccacgaaatcggcttcgccatgtacaccaacatgctcaacgccgccgtgcgcgccctg
aaagccggcgagaaggtgcccgacctgacccagccgctgtccatcacctcggaaatcaac
ctgcgcgtgccggcgctgctgaccaacgattactgccccgacgtgcatgaacgcctgacg
ctctacaagcgcctggccaactgcgacagcgaggacgagctgcgtgccatgcaggaggaa
ctgatcgaccgctacggcgaaatgccggcgcagacgatggccctgatggaaacccaccgc
ctgcgcctggccggccgcgcgctgggcctggccaagctggatgcgggtcccgccgcgata
caattgcagtttgtgccgaatcctccgatcgaccccgcgaacatcatccgcctgctgcag
agcgaccgcagcttcaagttggcgggacaggacaagctgctctggcaaaaacccagtgca
aacctgaaggaacgtgttgatgcagtgagggctctgttcatgaaactgggacccgaaaac
aataaatag
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