Sulfuritalea hydrogenivorans: SUTH_03266
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Entry
SUTH_03266 CDS
T03591
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor rpoD, Sigma-70
KO
K03086
RNA polymerase primary sigma factor
Organism
shd
Sulfuritalea hydrogenivorans
Pathway
shd02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
shd00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SUTH_03266 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shd03021
]
SUTH_03266 (rpoD)
Transcription machinery [BR:
shd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SUTH_03266 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SPO22
Motif
Other DBs
NCBI-ProteinID:
BAO31039
UniProt:
W0SHY7
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All DBs
Position
3425820..3428039
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AA seq
739 aa
AA seq
DB search
MPKEIAKQSKSKAAAKPVAKKPAPRKPVPAKKPVPVKAAAKAAPAKSRTPAKVAAKAPAK
PAPAKTPAKAAPAKTVKHAAPAEEVVVAAKPVAQPVAAKSVAKAIAESRGRKSKEKLIAP
EAKLIDLDTKRTRLKNLIALGKERGYLTYAEINDHLPDDLVDAEQIESIISTFNDMSIQV
FDEAPAVDDLLLNESAPAPVDVAEVEEEAEQALSTVDSEFGRTTDPVRMYMREMGSVELL
TREGEIEIAKRIEDGLKHMIMAISACPTTIAEMLETAGKVARDEMRIDELVDGLIDPNAT
DEDIEALAEDEELEVEEDTEDDEDDGGARISASLLQLKQDALERFSVIHALFAKLQPTLA
KKGSQDKGYLRLQKQISDELMNIRFTAKSIERLCDSVRGMVEAVRSHERKILHLCVDKAH
MPRAHFIKVFPGHEIDMEWLKHEVQSGKPYAAQLMRAAPNILEEQQRLIDLQTRIGIPLK
ELKDINKQMSTGEAKARRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV
DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGL
EPDPATLAIKMEMPEEKIRKILKISKEPISMETPIGDDDDSHLGDFIEDQATLSPGDAAL
FASLREVTKEVLDSLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALR
KLRHPTRSEKLRSFLDSET
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaggaaatcgccaagcagagcaagtcgaaggccgccgccaagccggtcgcgaag
aaacctgcgcccaggaagccggtgccggccaagaagcccgtgcccgtgaaggctgccgcc
aaagctgccccggccaagtccaggacacccgcgaaagtagccgccaaagccccggccaag
ccagcgccggcaaaaaccccggccaaggccgctcctgccaagaccgtgaagcatgcggca
ccggcagaggaagttgtcgtggccgccaaacccgtcgcccagccggtcgccgccaaatcg
gtcgccaaggccatcgccgaatcgcgcggccgcaagagcaaggaaaagctgatcgccccc
gaggcgaagctgatcgacctcgacaccaagcgcacgcgcctgaagaacctgatcgcgctc
ggcaaggaacgcggctacctgacctacgccgaaatcaacgaccacctgcccgacgacctg
gtggatgcggagcagatcgaatcgatcatctccaccttcaacgacatgagcatccaggtg
ttcgacgaggcgcccgccgtcgatgacctgctgctcaacgaatcggcgccggcgccggtg
gatgtggcggaagtcgaggaagaagccgaacaggcactgtccacggtcgattccgaattc
ggccgcaccaccgacccggtgcgcatgtacatgcgcgagatgggctcggtggaactcctc
acccgcgagggcgaaatcgaaatcgccaagcgcatcgaggatggcttgaagcacatgatc
atggcgatttccgcctgccccaccaccatcgccgaaatgctggaaacggcaggcaaggtg
gcgcgcgacgaaatgcgcatcgacgaactggtcgatggcctgatcgatccgaacgccacg
gatgaagacatcgaggcgctggccgaggacgaagagctggaagtcgaggaagataccgag
gacgacgaggacgacggcggcgcgcggatttccgcctcgctgctgcaactcaagcaggac
gccctcgaacgcttctcggtgatccacgccctgtttgccaagctgcagccgacgctggcg
aagaagggttcgcaggacaagggctacctgcgcctgcagaagcagatttcggacgaactg
atgaacatccgcttcaccgccaagtcgatcgagcgcctgtgcgactcggtgcgcggcatg
gtcgaagcggtacgcagccacgagcgcaagatcctgcacctctgcgtggacaaggcgcac
atgccacgcgcccatttcatcaaggtcttccccggccacgagatcgacatggagtggctc
aagcacgaagtgcagtcgggcaagccctatgccgcgcaactgatgcgcgccgcgccgaac
atccttgaggagcagcaacgcctgatcgacctgcaaacgcgcatcggcattccgctcaag
gaactcaaggacatcaacaagcagatgtccaccggcgaagccaaggcgcgccgcgccaag
cgcgagatgaccgaggccaatctgcgcctggtgatttcgatcgccaagaagtacaccaac
cgcggcctgcagttcctcgacctgatccaggaaggcaacatcggcctgatgaaggcggtg
gacaagttcgaataccgtcgcggctacaagttctcgacctacgccacctggtggatccgc
caggccatcacgcgttcgatcgccgaccaggcacgtaccatccgcatcccggtgcacatg
atcgaaaccatcaacaagatgaaccgcatcagccgccagatcctccaggaaaccggcctt
gagccggatccggcgacgctggcgatcaagatggaaatgcccgaggagaagatccgcaag
atcctcaagatttccaaggaaccgatttccatggaaacgccgatcggcgacgacgacgat
tcccaccttggcgatttcatcgaggaccaggcgacgctgtcgccgggcgacgcggcgctg
ttcgccagcctgcgcgaggtgaccaaggaggtgctggacagcctgacgccgcgcgaagcc
aaggtgctgcgcatgcgcttcggcatcgaaatgaacaccgatcacaccctggaagaagtc
ggcaagcagttcgacgtgacccgcgaacgcatccgccagattgaagccaaggccttgcgc
aagctgcgtcacccgacccgttcggaaaagttgcgcagtttcctcgattccgaaacctga
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