Sulfuritalea hydrogenivorans: SUTH_03312
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Entry
SUTH_03312 CDS
T03591
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
shd
Sulfuritalea hydrogenivorans
Pathway
shd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
shd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SUTH_03312
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shd03400
]
SUTH_03312
Enzymes [BR:
shd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
SUTH_03312
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
SUTH_03312
DNA repair and recombination proteins [BR:
shd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SUTH_03312
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
BAO31082
UniProt:
W0SJ65
LinkDB
All DBs
Position
3468754..3469578
Genome browser
AA seq
274 aa
AA seq
DB search
MPELPEVEVTCRGIAPALTGSRVVGVIARTPALRYPLPKHLDRTLAGSRLLAVKRRGKYL
LLDFGHGHLLIHLGMSGSLRLVPAGLAAEKHDHFDLLFAIKGKSVALRLRDPRRFGAILW
LEADPLRHPLLAVLGVEPLTEEFSAAWLKQELAGLAAAIKPTLMDSHRVVGIGNIYASES
LFRAGIDPRTPAGKVSLKRLERLVPAIKTTLAAAIAAGGSSLRDFIRSDGSSGYFQQQYF
VYGRGGEPCRVCGHPIRELRQGQRATFFCARCQR
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacttcccgaggtcgaagtcacctgtcgcggcattgcgccggcgctgaccggc
agccgggttgtcggcgtcattgcgcgaacgccggcgctgcgctatccgctgccgaaacac
ctcgaccgaacgctcgccggatcacgcctgctcgcggtcaagcgccgcggcaaatacctg
ctgctggatttcggccacggccatctgctgatccatctcggcatgtcgggcagtctgcgg
ctggttccggccgggctcgccgccgaaaagcatgatcatttcgatctgctgttcgccatc
aagggcaaatccgtggccctgcgcctgcgcgacccccgccgcttcggcgccatcctctgg
cttgaggccgacccactgcggcatccgctgctggccgtgctcggtgtcgaaccgctgacc
gaagaattcagtgccgcatggctcaaacaggaacttgccggactcgcggcggcgatcaag
ccgaccctgatggacagccatcgcgtggtcggcatcggcaatatctatgcgtcggaaagc
ctgtttcgcgccggaatcgatccgcgcacgccggcgggcaaggtctccctgaaacgcctg
gaacgcctggtgccggcgatcaagacgacgctggcggcagcgatcgctgccggcggcagc
agcctgcgcgacttcattcgttccgacggcagctcgggctatttccagcagcagtatttc
gtgtatggccgcggcggcgagccctgccgggtttgcgggcaccccatccgggaactgcgg
cagggacagcgcgcgacatttttctgcgcccgctgccagcgctaa
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