KEGG   Shewanella sp. MR-4: Shewmr4_0078
Entry
Shewmr4_0078      CDS       T00388                                 
Name
(GenBank) AMP-dependent synthetase and ligase
  KO
K01897  long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
Organism
she  Shewanella sp. MR-4
Pathway
she00061  Fatty acid biosynthesis
she00071  Fatty acid degradation
she01100  Metabolic pathways
she01212  Fatty acid metabolism
she02024  Quorum sensing
she04146  Peroxisome
Module
she_M00086  beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:she00001]
 09100 Metabolism
  09103 Lipid metabolism
   00061 Fatty acid biosynthesis
    Shewmr4_0078
   00071 Fatty acid degradation
    Shewmr4_0078
 09140 Cellular Processes
  09141 Transport and catabolism
   04146 Peroxisome
    Shewmr4_0078
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    Shewmr4_0078
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01004 Lipid biosynthesis proteins [BR:she01004]
    Shewmr4_0078
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:she04147]
    Shewmr4_0078
Enzymes [BR:she01000]
 6. Ligases
  6.2  Forming carbon-sulfur bonds
   6.2.1  Acid-thiol ligases
    6.2.1.3  long-chain-fatty-acid---CoA ligase
     Shewmr4_0078
Lipid biosynthesis proteins [BR:she01004]
 Acyl-CoA ligase
  Long/very long chain acyl-CoA ligase
   Shewmr4_0078
Exosome [BR:she04147]
 Exosomal proteins
  Exosomal proteins of breast milk
   Shewmr4_0078
  Exosomal proteins of breast cancer cells
   Shewmr4_0078
SSDB
Motif
Pfam: AMP-binding AMP-binding_C_3
Other DBs
NCBI-ProteinID: ABI37159
LinkDB
Position
89713..91506
AA seq 597 aa
MSLEQYHVIRLLQQQSQSLKEAIALEGFEMAAPWHQVSWQAFDQISHKIAQVLIELGVQV
QDRCVILSQNCPQWTCADIGTLKSRAVVVPIYPTSTLEQASFIINDAAAKVIFVDDAKQY
ALACELQKQCPTLEHVIVFDASVELAQDKAQHQHLDSLLAKEYGQSAELEQRLKDANLDD
LLTLIYTSGTTGDPKGVMLDYRNMASTVRQHDQILPFTTGDVSLAFLPLSHVFERGWSFY
VLCRGGHNVYLQNTQRVKEAISAVRPHTLCVVPRFLEKVYSAVQDKVAKSAEGRKKLFAW
AMGVGERQFEVSQGRAKGGLWLSLQWRLAHKLVYSKLQAVLGGRLKFMPCGGAALDLNVA
SFFHAIGIPVLCGYGMTETNATVTCNTLDNRVAGSNGKVLPEIEVKLGKDDEILVRGDTV
MRGYYNRPEDTAAAFEDGWLKTGDAGRLDANGNLFITDRIKELMKTSNGKYIAPQRVEGT
VGRCPFIEQVAVIADARNYVTALIVPAFESLEAWAKDKGLKYESSIELLRHSHVVEHFEQ
RLKHLQQELAGFEQIKKFTLLPEAFSMEAGLITPTLKLRRKMIYHKYAHEINAMYNN
NT seq 1794 nt   +upstreamnt  +downstreamnt
atgtctctcgaacaatatcacgtaattcgactattacagcagcaaagccagtcattaaaa
gaggctatagcgctggaaggttttgaaatggctgcgccttggcatcaagtcagttggcag
gcattcgatcaaatcagccataaaattgcacaggtgttgattgaacttggcgtacaagtg
caagaccgttgcgtgatcctgtcgcaaaactgccctcaatggacctgcgccgacataggt
accctgaaaagtcgtgccgttgtggtccccatttacccgaccagtaccttagagcaagcc
agctttatcattaacgatgcggcggctaaggtgatttttgtcgacgacgctaagcaatat
gcgctggcctgtgagctgcaaaaacagtgtccaaccctagagcatgtgattgtgtttgac
gcgagtgttgagctggcgcaggacaaggctcaacatcagcatttagacagtttgctagcc
aaagaatatggccagagtgctgagcttgagcagcgcttaaaggatgccaatctcgacgac
ctgttaaccctaatttatacctctggtaccacgggcgaccctaagggcgtgatgctggat
taccgcaatatggcttcgactgtgcgtcagcacgatcagatcctgccgtttaccactggc
gatgtgtcgttagctttcctaccgctaagccatgtgtttgagcgtggttggagcttctat
gtgctgtgccgtggcggccacaacgtgtatctgcaaaacacccaaagagtgaaagaggcc
atcagcgccgtgcgtccgcataccctgtgcgtggtgccgcgtttcctcgagaaggtttac
agcgcagtgcaggataaggtcgctaaatccgccgaaggccgtaaaaaactcttcgcctgg
gccatgggcgtcggcgaacgccagtttgaggtgagccaaggccgcgctaagggcggttta
tggttatccttgcaatggcgtttagcgcacaagctggtttacagcaagttgcaagccgtg
ctcggtgggcgcttaaagtttatgccctgcggtggcgccgccctcgatttaaacgtggcg
tctttcttccatgctattggtattccggtactttgtggttacggcatgacggaaacgaac
gccacagtgacctgtaataccctagataaccgagttgcgggttcgaacggtaaagtattg
cccgaaatcgaggtgaagctaggtaaggacgatgagattttagtccgtggcgacactgtg
atgcgcggttattacaatcgccccgaagacactgcagctgccttcgaagatggctggtta
aagactggcgatgcgggacgactcgatgccaatggcaatttatttattaccgaccgcatc
aaagagttaatgaaaacttccaacggtaaatacattgctccgcagcgggttgaaggcaca
gtgggccgttgcccctttatcgaacaggtggctgtgattgccgatgcccgtaactatgtg
acggcgctgattgtgccagcctttgaatccctcgaagcctgggccaaggataagggcttg
aaatacgagtcgtctatcgagctgctgcgtcacagccatgtggttgaacatttcgagcag
cgcttaaagcatttgcagcaagagttggcggggtttgagcaaatcaaaaagtttaccctg
ttgcctgaagccttttcgatggaggcgggattaatcaccccgacgctgaaattgcgccgc
aaaatgatttaccacaagtacgcccacgaaattaatgcgatgtacaataattga

DBGET integrated database retrieval system