Shewanella sp. MR-4: Shewmr4_0193
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Entry
Shewmr4_0193 CDS
T00388
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
she
Shewanella sp. MR-4
Pathway
she03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
she00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Shewmr4_0193
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
she03021
]
Shewmr4_0193
03400 DNA repair and recombination proteins [BR:
she03400
]
Shewmr4_0193
Enzymes [BR:
she01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Shewmr4_0193
Transcription machinery [BR:
she03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Shewmr4_0193
DNA repair and recombination proteins [BR:
she03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Shewmr4_0193
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ABI37274
UniProt:
Q0HNU3
LinkDB
All DBs
Position
220305..224522
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTSLERGQMLTEENYLDALEEYGDEFEAKM
GAEAVLELLRAIDLEKEIEQMREELPSINSETRRKKVTKRLKLMEAFHTSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPVITPSQDVVLGLYYTSRERINGRGEGMYFMSVAEVEKAYATG
AAELHARVKVRITETVIGDNGERTEQRRIVDTTVGRALLSQILPAGLSFDLVNQNMGKKQ
ISKLLNTCYRQLGLKDTVIFADQLMYTGFRYATISGASVGIDDMVIPAEKYTLVADAEAE
VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSTETVINRDGVEEKQASFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHEGLTMKPLIEGGDVVEPLRERVL
GRVVAVDVMYPGTEDVLAPRNTLLDEAWCDKLEEHSIDEVIVRSVITCDTDFGVCAACYG
RDLARGHLINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNSGSLKL
HNAKYVTNTDGKLVIVSRSSELAIIDELGREKERYKVPYGTVLEKLEEASVEAGDIIANW
DPHTHPIITEVAGSIKFVDMIDGVTMTRQTDELTGLSSIVILDVGQRGSAGKEMRPMIRL
VGADGSDLMIPGTEVPAQYFLPGSAIVNLDDNAQIAVGDALARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPADGGEHYEEMIPKWRNLNVFE
GEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCVITSAGDSEFLEGEQVEVSRVKIANRELVEQGKVPATFERELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDNLRGLKENVIVGRLIPAGTGYAYHKTRNDARAKKDEPV
VVNKITASEAEQNLADLLNLAGSQD
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaacagcaaagcaagactgaagaatttaacggcatc
aaaattggtctggcatcgcctgatctgatccgttcttggtcttttggtgaagttaagaag
ccagaaaccattaactaccgtaccttcaagcctgagcgtgaaggtctgttctgtgcgcgt
atctttggcccggtcaaagattacgaatgtttgtgcggtaagtacaagcgtttgaagcac
cgtggtgtgatctgtgaaaagtgtggcgtagaagttacccagactaaagtacgtcgtgag
cgtatgggtcacattgaactggctagcccagttgcccacatttggttcttgaaatcactg
ccgtcccgtatcggtttaatgctggacatgacgctgcgtgatatcgaacgcgtactgtat
tttgaatctttcgtcgtgatcgagcctggcatgaccagccttgaacgtggccaaatgctg
acagaagaaaactatctggacgcattagaagaatacggtgacgaattcgaagctaagatg
ggtgctgaagcggtattagaactgctgcgcgcgatcgatctcgaaaaagaaatcgaacaa
atgcgtgaagagctgccatcaatcaactctgagactcgtcgcaagaaagtgaccaagcgt
cttaagttgatggaagcgttccacacttctggcaacaagccagagtggatgatcttaaaa
gtactgcctgtgttaccacctgacttacgtccgctggtaccgctcgatggcggccgcttc
gcgacttcagatctgaacgatttgtaccgccgcgtgatcaaccgtaacaaccgtttgaag
cgtctgttagatttagctgcgccggacatcatcgtacgcaacgaaaagcgtatgttacaa
gagtctgttgatgcgctattagataacggtcgtcgtggtcgtgctattaccggttctaac
aaacgtcctctgaaatctttggccgatatgatcaaaggtaaacaaggtcgtttccgtcag
aacttattaggtaagcgtgttgactactctggtcgttcggtaattaccgtaggtcctact
ttacgtctgcaccaatgtggtcttcctaagaagatggcactggaactgttcaagccattc
atctatggcaagctggaaggtcgtggcttagcgacaaccatcaaagctgctaagaagatg
gtcgagcgtgaagtggcggaagtttgggacgttctggatgaagtgatccgcgaacatcca
gtgatgcttaaccgtgcaccaacactgcacagactgggtatccaagcgttcgaacctgta
ctgattgaaggtaaagcaatccagttacacccactcgtttgtgcggcatacaacgccgac
ttcgacggtgaccaaatggcggtacacgtaccgttaacactggaagcgcagcttgaagct
cgtgccctgatgatgtcaaccaacaacatcctgtcacctgcgaacggcgagcctgtaatc
actccgtctcaagacgtggtattaggtctgtactacaccagccgtgagcgtatcaacggc
cgtggtgaaggtatgtactttatgtctgttgctgaagttgaaaaagcttacgcaactggc
gctgctgaactgcatgcccgcgtgaaagtgcgtatcactgaaaccgttatcggtgacaat
ggtgagcgtactgaacaacgtcgtatcgtagatacaacagtgggtcgtgctctgctgtca
caaattctgccagcaggtttgtcatttgatctggttaaccagaacatgggcaaaaagcaa
atttctaagctattgaacacttgttaccgtcaattaggtctgaaagataccgttatcttc
gctgaccaactgatgtacacaggtttccgttacgccactatctctggtgcatctgtcggt
atcgacgacatggtgatcccagctgagaagtacaccttagttgctgacgctgaagcagaa
gtgctcgaaattcaagagcagttccaatcaggtctggtgaccgcgggtgagcgttacaac
aaagtaatcgacatctgggcaagtgcgaacgaaaaagtttctaaagcgatgatggaaaac
ctgtcaactgagacagtgattaaccgtgatggcgttgaagagaaacaagcttcgttcaac
agcatttacatgatggccgactcgggcgctcgtggtagtgccgcacagatccgtcagtta
gcgggtatgcgtggtctgatggcgaaaccagacggttcgatcatcgaaaccccaatcgtg
gcgaacttccgtgaaggtctgaacgttcttcagtacttcatctcaacccacggtgcgcgt
aaaggtctagccgataccgcattgaagacagcgaactcgggttacctgactcgtcgtctg
gttgacgttgctcaagacttagtggtcatcgaagacgattgtggtactcacgaaggtctg
acaatgaagccgctgatcgaaggtggtgacgttgttgagccattacgtgaacgcgtactg
ggtcgtgtggttgctgttgatgttatgtacccaggtacagaagatgtgcttgcgccacgt
aacactctgctcgatgaagcatggtgtgacaagttagaagaacactcaatcgacgaagtg
attgtacgttcagtaattacctgtgataccgacttcggtgtgtgtgcggcatgttatggc
cgtgacttagcccgtggtcacctgattaaccacggcgaagctatcggtgttgtcgcggcg
caatcaatcggtgaacctggtacacagttaacgatgcgtacgttccacatcggtggtgcg
gcatcgagagcgtctgcagaaaacaacgttcaagtgaagaactctggttcgttgaaactg
cacaacgctaagtacgtgactaacactgacggcaagctggttatcgtttctcgttcttct
gaactggcgatcatcgacgaattaggtcgtgagaaagagcgttataaagtgccttacggt
actgtgctcgagaagttagaagaagcatcagtagaagcgggcgatatcatcgctaactgg
gatccacatactcacccaatcatcactgaagtggcgggtagtattaagttcgttgacatg
atcgacggcgtgaccatgactcgtcaaacagacgaactgacaggtctgtcatcaatcgtg
atcctcgacgtgggtcaacgtggttcagcgggtaaagaaatgcgcccaatgatccgtctt
gttggtgccgacggtagcgacctgatgatcccaggtactgaagtgccggcacaatacttc
ttaccaggcagtgcgatcgttaaccttgacgacaatgcgcaaatcgccgtgggtgacgcg
ttagcacgtattccacaagaatcgtctaaaacacgcgacatcacgggtggtctaccacgc
gttgctgacctgttcgaagcccgtaagccaaaagagccagctattctggcggaaatctct
ggtaccatctcgtttggtaaagagaccaaaggcaagcgtcgtctggtgatcacaccagcg
gatggcggagaacattacgaagagatgatcccgaaatggcgtaacttaaacgtgttcgaa
ggtgaaaaagtcgaacgtggtgaagttattgctgacggtccagaggcggcgcacgacatt
ctgcgtctacgtggcatccacaacgtagcaaactacattgtgaatgaagtacaagacgta
taccgtctacaaggcgtgaagatcaacgataaacatatcgaagtgatcatccgtcaaatg
ctgcgtaagtgcgtgatcacctctgcgggtgacagtgagttcttagaaggcgaacaagtc
gaagtgtctcgcgtcaagattgctaaccgcgaacttgtcgaacaaggcaaagtgcctgcg
accttcgaacgtgaactgctgggtattaccaaagcgtctctggcaacagaatcgtttatc
tctgcagcatcattccaagaaacgactcgcgtactgacagaagctgccgtaggtggtaag
tctgataacttacgtggtctgaaagaaaacgtaatcgttggccgcctgatcccagccggt
actggttatgcttatcacaagactcgtaacgatgcccgtgctaagaaagacgagccagtt
gtagtgaataagatcactgcaagtgaagcagaacaaaatctcgcagacctgttaaacttg
gctggcagccaagattaa
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integrated database retrieval system
