Shewanella sp. MR-4: Shewmr4_0745
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Entry
Shewmr4_0745 CDS
T00388
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
she
Shewanella sp. MR-4
Brite
KEGG Orthology (KO) [BR:
she00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
she03009
]
Shewmr4_0745
Enzymes [BR:
she01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Shewmr4_0745
Ribosome biogenesis [BR:
she03009
]
Prokaryotic type
rRNA helicases
Shewmr4_0745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
AAA_30
U-box
AAA_19
CMS1
Helicase_C_2
AAA_22
YlmH_RBD
Motif
Other DBs
NCBI-ProteinID:
ABI37825
LinkDB
All DBs
Position
866983..868359
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AA seq
458 aa
AA seq
DB search
MAFSTLKLKPELLENLTTMGYYEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLL
NKLDVKRFRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHG
AHIIVGTPGRIVDHLERNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLL
FSATFPEQIQSIAKQIMYDPVMVKVAVTHEKSTIEQHFYHLDDDKARMQALQLLLLDRKP
ESAVVFCNTKRETQKVADELSDAGFSVIALHGDLEQRDRDETLLQFANKSACVLVATDVA
ARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAFTFFNDQDGYKIALLEEYLE
RDIQSEALPSLSLLGTAPNAPTMITLQIDGGKKEKLRPGDILGALTGENGIEGSQVGKIL
VTDYRAYVAVNRKVAKKALSKITSGRIKGKSYRAWLMK
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atggctttctcgactcttaagctaaaacccgaactgcttgagaaccttaccactatgggc
tattacgaaatgacgccgattcaggcgcagagtctgccagccattttagcgggcgaggat
gtgattggtcagggcaagacgggttcgggtaaaacggcggccttcggtttaggcttgttg
aacaagttagatgtgaagcgttttcgcattcaaaccttagtgctgtgtccaacccgcgaa
ctggctgaccaagtagcgcaggagatccgcacactggcgcgtggtattcacaacgtaaaa
gtgcttaccctctgtggcggcgtgcccatggggccgcaaatcggttcgctcgagcatggc
gcccacattatcgttggtacgccggggcggattgtcgatcacttagagcgtaaccgttta
gacctaagcaacctgaatatgctcgtgcttgacgaagccgaccgtatgctggaaatgggc
ttccaaccccagctcgatgcgattatcgagcagtcgccacgcgagcgccaaaccttgctg
tttagcgcaaccttccccgagcagatccagtcgattgccaagcaaattatgtacgaccct
gtgatggtgaaagtggccgtgacccacgaaaagagcaccattgagcagcatttctaccac
ttggatgacgacaaggcgcgcatgcaggcgctgcaattattgctgctggatcgcaagccc
gagagtgcggtggtgttttgtaataccaagcgcgaaacccaaaaagtggccgatgaactc
agcgatgcaggctttagcgttatcgccctgcacggcgacttagagcagcgtgaccgggat
gaaaccctgctgcaatttgccaacaagagcgcctgtgtgttggtcgcaaccgatgtggct
gcccgtggcctcgatatcgacgcactggacgcggtatttaactaccatgtggcctatgat
accgaagtgcatattcaccgtattggccgtaccggccgtgcgggcagtaagggcgcggct
tttaccttctttaacgatcaagatggctacaaaattgcgttattagaagagtacttagag
cgcgatattcagagcgaagccttaccatcattaagtttgctgggcactgcgcccaatgcg
ccaaccatgatcaccctgcaaatcgatggcggtaaaaaagagaaactccgccccggtgat
atcctcggcgccctcactggtgagaatggtatcgaaggctcgcaggtcggcaaaatcctt
gtgaccgattaccgcgcctatgtggcggtgaatcgtaaagtcgctaaaaaggcactgagt
aagatcaccagcggccgcattaaaggcaagtcctaccgcgcgtggttaatgaaataa
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