Shewanella sp. MR-4: Shewmr4_0825
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Entry
Shewmr4_0825 CDS
T00388
Name
(GenBank) formate dehydrogenase, alpha subunit
KO
K00123
formate dehydrogenase major subunit [EC:
1.17.1.9
]
Organism
she
Shewanella sp. MR-4
Pathway
she00630
Glyoxylate and dicarboxylate metabolism
she00680
Methane metabolism
she01100
Metabolic pathways
she01120
Microbial metabolism in diverse environments
she01200
Carbon metabolism
Brite
KEGG Orthology (KO) [BR:
she00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
Shewmr4_0825
09102 Energy metabolism
00680 Methane metabolism
Shewmr4_0825
Enzymes [BR:
she01000
]
1. Oxidoreductases
1.17 Acting on CH or CH2 groups
1.17.1 With NAD+ or NADP+ as acceptor
1.17.1.9 formate dehydrogenase
Shewmr4_0825
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Molybdopterin
Pyr_redox_2
Molydop_binding
Fer4_20
Molybdop_Fe4S4
Pyr_redox
Fer2_4
Pyr_redox_3
NAD_binding_8
Fer4_7
Fer4
DAO
HI0933_like
Fer4_8
Fer4_6
Thi4
NAD_binding_7
FAD_oxidored
Fer4_9
GIDA
Amino_oxidase
FAD_binding_3
FAD_binding_2
Fer4_2
Fer4_22
Fer4_10
AlaDh_PNT_C
Fer4_21
Fer4_17
Shikimate_DH
Fer4_16
Fer4_15
Lys_Orn_oxgnase
Fer4_18
Motif
Other DBs
NCBI-ProteinID:
ABI37905
LinkDB
All DBs
Position
complement(964562..968860)
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AA seq
1432 aa
AA seq
DB search
MIELRIDNQIVTAEPNDNLLRAASKAGIAIPSLCDPTDATRQLGAAPHADKQDCNLCLVQ
IENTDASLRCVKACETPAEAGMKVITQSAYLTKQRQAALSTILSDHFADCEAPCQQACPA
GVDVQSYLYHIAQGDHSQAIKVIKDTLPLPLSIGRVCPAFCETECRRGLVDDPIAIRQLK
RHAADLDLADDEQGGSYQPPRLADTGKKIAIIGAGPAGLSAGYYLSNQGHSVEIFEAMPK
AGGWLRYGIPEYRLPKAILDKEIELLCRNGLTIHTDTRLGHEIHLAQLVADFDAVCLAIG
AQKAVPMNYKGSELAGCYLGVGFLKEHCLDKQLKLGKKVAVIGGGNTAIDCARTAVREGC
DVTLIYRRTRAEMPAEAYEVHEAEVEGVKFHFLTNPIENHSDANGQVEAVTFSKMALGEA
DASGRRAPVDTGETFTEAFDTVIAAVSQAPDLSFMQDPMGQLSHGELALSRWNTLIGCEQ
TMSSGVEKLFVMGDARRGPATAVAAIGDGRKAAIAIDKMLKIGLSCDLHAHEFNSVKTIP
SALIPNALKQTETSSKAGSTHYPHTPRQPRLKMPELTALQRLLNYSEVELGFPADAAMQE
AARCLECACQANTDCKLRDYATDYGVEAKSLATENARHFSVDKSAPFIQFDANRCISCGK
CVDVCQQQSGHCAIQFSQDSYQALPQEMTQHMERRAPRVGFSASMADSLCVQCGNCVQVC
PTGALVDARDKRQGDSTELKTASTICTYCGVGCRLDLKIDSNANRIRHIEGNKDSVVNQG
MLCVKGRFGFDFIHSDKRLTTPLIRKNGELQPSSWPEAIAYVAKRLTEIKQKDGSNALAS
LASAKATNEDNFVLQKFVRSVLGTNNIDHCARLCHSSTVTGLQQSIGSGAMTNDIPSIKD
SDVIFILGSDTTCAHPIIASKIQQAVMQHGARLLVADPKRVGIAEKAELYVAHRPGTDVM
LLNAIMAEIIRNDWQDKDYIAERTEGIVALYAELSKEDYSLENAALITGVKAEDIARLAR
TIGTAQKTAVYYAMGITQHTTGHDNVTAISNLQLLCGNIGVSGAGINPLRGQSNVQGACD
MGALPNYFTGYQKVTDIHARMRFEDHWQTPLSEEIGVTATHMMHDIAKGNIKALYVMGEN
PVLSDPDQAHVLNALSKVEFLVVQDIFLTETAELAHVVLPAAAFVEKRGHFTNTERRVQR
LEQALASPGEALPDWQIVQAVANAMGANWDYANEEAIWCEINELTPQYRGIRWDRLSANA
EGQISQGIQWPCPDETHPGTPIMHQSQFTRGLGLFTPVSYRLPAEMPCNEYPLTLSTGRL
LEQFHTGTLTRKTPGLDLLGAPKVMISVYDAEQLGIHNGDKLRLTTRRGEIEIDAFVTKR
AQAGVLFLPFHFVEAAANKLTINALDPVAYIPEYKVCAVRAEKVTTSVSEPA
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atgatagaacttcgaatcgataatcagatagtcacggccgagccgaacgataacctactt
cgggcagccagtaaggctggcatagcaattccgagtctgtgcgatccaacagacgccaca
cggcaattgggcgcggctccccatgccgataaacaggactgcaacctctgcttagtgcaa
atcgaaaataccgatgccagcctgcgctgcgttaaagcctgtgaaacgcccgccgaagcg
ggcatgaaggtcatcacccaatcggcatatttaaccaaacagcgccaagctgcattgagc
acaattttaagtgaccactttgccgattgtgaggcgccttgccaacaggcctgccccgcg
ggtgtcgatgtgcaaagttacctgtaccacattgcccaaggcgaccatagccaagccatt
aaagtcattaaagataccctgccgctgccgctgtcgattggccgagtctgccccgcgttt
tgcgagactgaatgccgccgcggcctcgtcgatgaccccattgctattcgtcaactcaag
cgccacgccgccgatttagacttggccgacgatgaacaaggtggcagttatcaaccacca
cgcctcgcagatacgggcaaaaaaattgccattattggcgcgggccccgcaggcttaagt
gccggttattacctgtcaaaccaagggcatagtgttgagatttttgaagccatgcccaag
gcgggcggctggctgcgctacgggatccccgaataccgtttacccaaggcaattctcgat
aaagaaatagagctgctatgccgcaatgggttaaccattcatacggatactcgcctcggc
catgaaattcatttagcccaactggtcgccgatttcgatgcggtgtgccttgccatcggc
gcccaaaaggcggtgccgatgaactacaaaggctcagaacttgcgggctgttacctgggg
gtgggttttcttaaggaacattgcctcgacaaacaattgaagttgggcaaaaaagtcgcc
gtgattggtggtggcaacaccgccatcgactgcgcccgcaccgccgtgcgcgaaggctgc
gatgtcaccttaatctaccgccgtacccgcgccgaaatgcccgccgaagcctacgaagta
catgaggccgaagttgaaggcgtcaaattccatttcttaaccaatcccattgaaaatcat
agcgatgccaatggacaggtagaagctgtcaccttcagcaaaatggcactcggcgaagcc
gatgcctcgggcagacgcgcgcccgtggacacgggggaaacctttaccgaggccttcgat
accgttatcgccgccgtatcccaagcgccagatctgagttttatgcaagatcctatgggg
caactcagccatggcgagctggcgctgagccgctggaacaccctgataggctgcgagcaa
accatgtcatcgggtgtagaaaaactgtttgtgatgggcgatgcccgcagaggtcctgcc
accgccgtagccgccattggcgatggccgtaaagcggcaatcgctattgataagatgcta
aaaatcggccttagctgcgatttacatgcccatgagtttaactcggtcaaaaccatacca
agcgccctcattccaaacgctcttaagcaaaccgaaacaagctcaaaagcagggtcaacg
cattatccccatacgccgcgtcagccccgcttgaagatgcccgaactcacggcgctgcaa
cggctactgaattacagtgaagtcgagttaggttttcccgcagatgccgccatgcaagag
gcggcgcgctgtctcgagtgcgcctgtcaggccaatactgactgtaagcttagggattac
gccacggattatggtgtcgaggccaaaagcttagccactgaaaatgcacggcatttcagt
gttgataagagcgcaccctttattcaattcgatgctaatcgctgtattagctgcggtaaa
tgcgtcgatgtgtgtcaacagcagagtggccactgcgcgattcaatttagccaagattcc
tatcaggcgctgccgcaggaaatgactcaacacatggagcgccgcgcgccgagagtcggc
tttagtgcgagcatggccgatagcctctgtgtgcaatgtggtaactgtgtacaggtttgt
ccgacgggcgcactggtcgatgcccgagataaacgccaaggcgatagcacagaattaaaa
actgcctcgacgatttgtacttactgcggcgttggctgtcgcctcgaccttaaaatcgac
tccaacgccaatcgcattcgtcatatcgaaggcaataaggactcggtcgttaaccaaggc
atgctgtgtgttaagggacgttttggcttcgattttattcacagcgacaaacgtctcact
acgccactaatacgtaaaaacggtgagctgcaaccgagtagttggcccgaagccattgcc
tatgtggcaaaacgcttaaccgagataaaacaaaaagatggcagcaatgctctcgccagt
ctcgcctcggccaaggccaccaacgaagataactttgtgctgcaaaagtttgttcgcagt
gttcttggcaccaacaatattgatcactgcgcccgcctatgccactcatcgacggtaacg
ggtttgcagcagagtattggtagcggtgccatgaccaatgatattccgagcatcaaggac
tcggacgtcatctttatcttaggctcagacaccacctgcgcccatccgattatcgcctct
aaaattcaacaggcagtgatgcagcacggcgcgcgtttgctggttgccgatccgaagcgg
gttggcattgccgaaaaggccgagctgtatgtcgcccacagaccggggacggatgtgatg
ctgctcaacgccattatggcagaaattattcgtaacgattggcaggataaagactatatc
gccgagcgtaccgaaggcattgtggccctctatgcggagttatccaaggaggattactcc
ctcgaaaacgcagcactcatcacgggcgtaaaagccgaagacattgcccgcctcgcgcgc
accataggcacggcgcaaaagaccgcggtttattacgccatgggtatcactcagcatacg
actgggcacgataacgtcacggctatctctaatttgcagctactttgcggcaatattggt
gtgtcaggcgcggggattaacccacttcgcggccagagtaatgtccaaggtgcctgcgac
atgggcgcgctacccaactattttaccggttaccaaaaggtcacggatattcatgccaga
atgcgctttgaagaccactggcaaacgccgttatcggaggagattggcgtcaccgcaacc
catatgatgcatgatattgccaagggcaacattaaagccttgtatgtgatgggtgagaat
cccgtgctcagcgaccccgaccaagcccatgtacttaatgccttgagcaaagtcgagttt
ttggtggtgcaggatatctttttaaccgagacggccgagcttgcccatgtggtcttgccc
gccgccgcattcgtggaaaaacgcggtcactttaccaataccgagcgtcgggtgcagcga
ctcgagcaagcgctcgcctcaccgggtgaagccttacccgattggcagatagtgcaggcc
gtcgctaatgccatgggcgctaactgggattatgccaacgaagaagccatttggtgcgag
atcaacgaacttactccgcagtatcgcggtattcgctgggacagattaagtgccaatgcc
gaaggtcaaatctctcaagggattcaatggccctgtccagatgaaacccatcccgggacg
ccgattatgcaccaaagccaattcactcgaggcttaggcttatttacccccgttagttat
cgcctgcctgcagagatgccctgcaacgagtatccgctgacgctatcgacggggcggcta
ttggagcaattccacacgggcacactcacccgtaaaacaccagggctggatctactcggc
gcgcctaaggtgatgatttctgtctatgatgcggagcaactggggatccataacggcgat
aaacttcgccttaccacccgccgcggagagattgaaatcgatgcctttgtgactaaacgc
gcccaagcgggcgtgctgttcctgccgttccattttgtggaggccgcagcgaataagctc
acgatcaatgccttagatcctgtggcttatattcccgaatataaggtctgcgcggtcagg
gctgaaaaggtgacaacaagcgtgagtgaaccagcctaa
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