KEGG   Shewanella sp. MR-4: Shewmr4_0825
Entry
Shewmr4_0825      CDS       T00388                                 
Name
(GenBank) formate dehydrogenase, alpha subunit
  KO
K00123  formate dehydrogenase major subunit [EC:1.17.1.9]
Organism
she  Shewanella sp. MR-4
Pathway
she00630  Glyoxylate and dicarboxylate metabolism
she00680  Methane metabolism
she01100  Metabolic pathways
she01120  Microbial metabolism in diverse environments
she01200  Carbon metabolism
Brite
KEGG Orthology (KO) [BR:she00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00630 Glyoxylate and dicarboxylate metabolism
    Shewmr4_0825
  09102 Energy metabolism
   00680 Methane metabolism
    Shewmr4_0825
Enzymes [BR:she01000]
 1. Oxidoreductases
  1.17  Acting on CH or CH2 groups
   1.17.1  With NAD+ or NADP+ as acceptor
    1.17.1.9  formate dehydrogenase
     Shewmr4_0825
SSDB
Motif
Pfam: Molybdopterin Pyr_redox_2 Molydop_binding Fer4_20 Molybdop_Fe4S4 Pyr_redox Fer2_4 Pyr_redox_3 NAD_binding_8 Fer4_7 Fer4 DAO HI0933_like Fer4_8 Fer4_6 Thi4 NAD_binding_7 FAD_oxidored Fer4_9 GIDA Amino_oxidase FAD_binding_3 FAD_binding_2 Fer4_2 Fer4_22 Fer4_10 AlaDh_PNT_C Fer4_21 Fer4_17 Shikimate_DH Fer4_16 Fer4_15 Lys_Orn_oxgnase Fer4_18
Other DBs
NCBI-ProteinID: ABI37905
LinkDB
Position
complement(964562..968860)
AA seq 1432 aa
MIELRIDNQIVTAEPNDNLLRAASKAGIAIPSLCDPTDATRQLGAAPHADKQDCNLCLVQ
IENTDASLRCVKACETPAEAGMKVITQSAYLTKQRQAALSTILSDHFADCEAPCQQACPA
GVDVQSYLYHIAQGDHSQAIKVIKDTLPLPLSIGRVCPAFCETECRRGLVDDPIAIRQLK
RHAADLDLADDEQGGSYQPPRLADTGKKIAIIGAGPAGLSAGYYLSNQGHSVEIFEAMPK
AGGWLRYGIPEYRLPKAILDKEIELLCRNGLTIHTDTRLGHEIHLAQLVADFDAVCLAIG
AQKAVPMNYKGSELAGCYLGVGFLKEHCLDKQLKLGKKVAVIGGGNTAIDCARTAVREGC
DVTLIYRRTRAEMPAEAYEVHEAEVEGVKFHFLTNPIENHSDANGQVEAVTFSKMALGEA
DASGRRAPVDTGETFTEAFDTVIAAVSQAPDLSFMQDPMGQLSHGELALSRWNTLIGCEQ
TMSSGVEKLFVMGDARRGPATAVAAIGDGRKAAIAIDKMLKIGLSCDLHAHEFNSVKTIP
SALIPNALKQTETSSKAGSTHYPHTPRQPRLKMPELTALQRLLNYSEVELGFPADAAMQE
AARCLECACQANTDCKLRDYATDYGVEAKSLATENARHFSVDKSAPFIQFDANRCISCGK
CVDVCQQQSGHCAIQFSQDSYQALPQEMTQHMERRAPRVGFSASMADSLCVQCGNCVQVC
PTGALVDARDKRQGDSTELKTASTICTYCGVGCRLDLKIDSNANRIRHIEGNKDSVVNQG
MLCVKGRFGFDFIHSDKRLTTPLIRKNGELQPSSWPEAIAYVAKRLTEIKQKDGSNALAS
LASAKATNEDNFVLQKFVRSVLGTNNIDHCARLCHSSTVTGLQQSIGSGAMTNDIPSIKD
SDVIFILGSDTTCAHPIIASKIQQAVMQHGARLLVADPKRVGIAEKAELYVAHRPGTDVM
LLNAIMAEIIRNDWQDKDYIAERTEGIVALYAELSKEDYSLENAALITGVKAEDIARLAR
TIGTAQKTAVYYAMGITQHTTGHDNVTAISNLQLLCGNIGVSGAGINPLRGQSNVQGACD
MGALPNYFTGYQKVTDIHARMRFEDHWQTPLSEEIGVTATHMMHDIAKGNIKALYVMGEN
PVLSDPDQAHVLNALSKVEFLVVQDIFLTETAELAHVVLPAAAFVEKRGHFTNTERRVQR
LEQALASPGEALPDWQIVQAVANAMGANWDYANEEAIWCEINELTPQYRGIRWDRLSANA
EGQISQGIQWPCPDETHPGTPIMHQSQFTRGLGLFTPVSYRLPAEMPCNEYPLTLSTGRL
LEQFHTGTLTRKTPGLDLLGAPKVMISVYDAEQLGIHNGDKLRLTTRRGEIEIDAFVTKR
AQAGVLFLPFHFVEAAANKLTINALDPVAYIPEYKVCAVRAEKVTTSVSEPA
NT seq 4299 nt   +upstreamnt  +downstreamnt
atgatagaacttcgaatcgataatcagatagtcacggccgagccgaacgataacctactt
cgggcagccagtaaggctggcatagcaattccgagtctgtgcgatccaacagacgccaca
cggcaattgggcgcggctccccatgccgataaacaggactgcaacctctgcttagtgcaa
atcgaaaataccgatgccagcctgcgctgcgttaaagcctgtgaaacgcccgccgaagcg
ggcatgaaggtcatcacccaatcggcatatttaaccaaacagcgccaagctgcattgagc
acaattttaagtgaccactttgccgattgtgaggcgccttgccaacaggcctgccccgcg
ggtgtcgatgtgcaaagttacctgtaccacattgcccaaggcgaccatagccaagccatt
aaagtcattaaagataccctgccgctgccgctgtcgattggccgagtctgccccgcgttt
tgcgagactgaatgccgccgcggcctcgtcgatgaccccattgctattcgtcaactcaag
cgccacgccgccgatttagacttggccgacgatgaacaaggtggcagttatcaaccacca
cgcctcgcagatacgggcaaaaaaattgccattattggcgcgggccccgcaggcttaagt
gccggttattacctgtcaaaccaagggcatagtgttgagatttttgaagccatgcccaag
gcgggcggctggctgcgctacgggatccccgaataccgtttacccaaggcaattctcgat
aaagaaatagagctgctatgccgcaatgggttaaccattcatacggatactcgcctcggc
catgaaattcatttagcccaactggtcgccgatttcgatgcggtgtgccttgccatcggc
gcccaaaaggcggtgccgatgaactacaaaggctcagaacttgcgggctgttacctgggg
gtgggttttcttaaggaacattgcctcgacaaacaattgaagttgggcaaaaaagtcgcc
gtgattggtggtggcaacaccgccatcgactgcgcccgcaccgccgtgcgcgaaggctgc
gatgtcaccttaatctaccgccgtacccgcgccgaaatgcccgccgaagcctacgaagta
catgaggccgaagttgaaggcgtcaaattccatttcttaaccaatcccattgaaaatcat
agcgatgccaatggacaggtagaagctgtcaccttcagcaaaatggcactcggcgaagcc
gatgcctcgggcagacgcgcgcccgtggacacgggggaaacctttaccgaggccttcgat
accgttatcgccgccgtatcccaagcgccagatctgagttttatgcaagatcctatgggg
caactcagccatggcgagctggcgctgagccgctggaacaccctgataggctgcgagcaa
accatgtcatcgggtgtagaaaaactgtttgtgatgggcgatgcccgcagaggtcctgcc
accgccgtagccgccattggcgatggccgtaaagcggcaatcgctattgataagatgcta
aaaatcggccttagctgcgatttacatgcccatgagtttaactcggtcaaaaccatacca
agcgccctcattccaaacgctcttaagcaaaccgaaacaagctcaaaagcagggtcaacg
cattatccccatacgccgcgtcagccccgcttgaagatgcccgaactcacggcgctgcaa
cggctactgaattacagtgaagtcgagttaggttttcccgcagatgccgccatgcaagag
gcggcgcgctgtctcgagtgcgcctgtcaggccaatactgactgtaagcttagggattac
gccacggattatggtgtcgaggccaaaagcttagccactgaaaatgcacggcatttcagt
gttgataagagcgcaccctttattcaattcgatgctaatcgctgtattagctgcggtaaa
tgcgtcgatgtgtgtcaacagcagagtggccactgcgcgattcaatttagccaagattcc
tatcaggcgctgccgcaggaaatgactcaacacatggagcgccgcgcgccgagagtcggc
tttagtgcgagcatggccgatagcctctgtgtgcaatgtggtaactgtgtacaggtttgt
ccgacgggcgcactggtcgatgcccgagataaacgccaaggcgatagcacagaattaaaa
actgcctcgacgatttgtacttactgcggcgttggctgtcgcctcgaccttaaaatcgac
tccaacgccaatcgcattcgtcatatcgaaggcaataaggactcggtcgttaaccaaggc
atgctgtgtgttaagggacgttttggcttcgattttattcacagcgacaaacgtctcact
acgccactaatacgtaaaaacggtgagctgcaaccgagtagttggcccgaagccattgcc
tatgtggcaaaacgcttaaccgagataaaacaaaaagatggcagcaatgctctcgccagt
ctcgcctcggccaaggccaccaacgaagataactttgtgctgcaaaagtttgttcgcagt
gttcttggcaccaacaatattgatcactgcgcccgcctatgccactcatcgacggtaacg
ggtttgcagcagagtattggtagcggtgccatgaccaatgatattccgagcatcaaggac
tcggacgtcatctttatcttaggctcagacaccacctgcgcccatccgattatcgcctct
aaaattcaacaggcagtgatgcagcacggcgcgcgtttgctggttgccgatccgaagcgg
gttggcattgccgaaaaggccgagctgtatgtcgcccacagaccggggacggatgtgatg
ctgctcaacgccattatggcagaaattattcgtaacgattggcaggataaagactatatc
gccgagcgtaccgaaggcattgtggccctctatgcggagttatccaaggaggattactcc
ctcgaaaacgcagcactcatcacgggcgtaaaagccgaagacattgcccgcctcgcgcgc
accataggcacggcgcaaaagaccgcggtttattacgccatgggtatcactcagcatacg
actgggcacgataacgtcacggctatctctaatttgcagctactttgcggcaatattggt
gtgtcaggcgcggggattaacccacttcgcggccagagtaatgtccaaggtgcctgcgac
atgggcgcgctacccaactattttaccggttaccaaaaggtcacggatattcatgccaga
atgcgctttgaagaccactggcaaacgccgttatcggaggagattggcgtcaccgcaacc
catatgatgcatgatattgccaagggcaacattaaagccttgtatgtgatgggtgagaat
cccgtgctcagcgaccccgaccaagcccatgtacttaatgccttgagcaaagtcgagttt
ttggtggtgcaggatatctttttaaccgagacggccgagcttgcccatgtggtcttgccc
gccgccgcattcgtggaaaaacgcggtcactttaccaataccgagcgtcgggtgcagcga
ctcgagcaagcgctcgcctcaccgggtgaagccttacccgattggcagatagtgcaggcc
gtcgctaatgccatgggcgctaactgggattatgccaacgaagaagccatttggtgcgag
atcaacgaacttactccgcagtatcgcggtattcgctgggacagattaagtgccaatgcc
gaaggtcaaatctctcaagggattcaatggccctgtccagatgaaacccatcccgggacg
ccgattatgcaccaaagccaattcactcgaggcttaggcttatttacccccgttagttat
cgcctgcctgcagagatgccctgcaacgagtatccgctgacgctatcgacggggcggcta
ttggagcaattccacacgggcacactcacccgtaaaacaccagggctggatctactcggc
gcgcctaaggtgatgatttctgtctatgatgcggagcaactggggatccataacggcgat
aaacttcgccttaccacccgccgcggagagattgaaatcgatgcctttgtgactaaacgc
gcccaagcgggcgtgctgttcctgccgttccattttgtggaggccgcagcgaataagctc
acgatcaatgccttagatcctgtggcttatattcccgaatataaggtctgcgcggtcagg
gctgaaaaggtgacaacaagcgtgagtgaaccagcctaa

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