Shewanella sp. MR-4: Shewmr4_0883
Help
Entry
Shewmr4_0883 CDS
T00388
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
she
Shewanella sp. MR-4
Pathway
she00061
Fatty acid biosynthesis
she00071
Fatty acid degradation
she01100
Metabolic pathways
she01212
Fatty acid metabolism
she02024
Quorum sensing
she04146
Peroxisome
Module
she_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
she00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Shewmr4_0883
00071 Fatty acid degradation
Shewmr4_0883
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Shewmr4_0883
09145 Cellular community - prokaryotes
02024 Quorum sensing
Shewmr4_0883
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
she01004
]
Shewmr4_0883
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
she04147
]
Shewmr4_0883
Enzymes [BR:
she01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Shewmr4_0883
Lipid biosynthesis proteins [BR:
she01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Shewmr4_0883
Exosome [BR:
she04147
]
Exosomal proteins
Exosomal proteins of breast milk
Shewmr4_0883
Exosomal proteins of breast cancer cells
Shewmr4_0883
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
AMP-binding_C_2
Motif
Other DBs
NCBI-ProteinID:
ABI37963
LinkDB
All DBs
Position
complement(1033621..1035225)
Genome browser
AA seq
534 aa
AA seq
DB search
MAYDQESQLELGKYSSLIDLIERTSQRFGDKTAYACLGKTSSFNDIERDSRYFSAYLQNN
TNLKPGDRIAIQLPNITQFVIAAYGALRAGLILVNTNPLYTERELIHQFNDSGAKALVVL
SDLLPTLAKVVATTPIELVISTHPLDLIDPQVQPKTGLKNVEFCQVLKQGAELPFNRIVP
AAGDLAALQYTGGTTGLSKGAMLTHGNMLANAAQVKSRIGSVISEGEDIFVAPLPIYHIY
AFMVNLVLYFECGGCSVLIPNPRDISGLIKTLAKYPFTGFAGLNTLFVALCHQPEFKALD
FSHLKITISGGTALTAAAANIWQQTTGNTISEGYGLSETSPVISLNAPGYQKIGTIGKPV
LGTEVKLLDENGNEVAQGEAGELAARGPQVMLGYWNNLQETANVMTADGFFKTGDIAILN
EEGFHQIVDRKKDMIIVSGFNVYPNEVENVLASHPNIIECAVVGVKDEHSGEAVKAFVVL
KDDSQDHEQMKTAIINFCREQLTAYKLPKLIEFMPQLPKSTVGKILRRELKHQA
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atggcatacgatcaagagtcacaactcgaacttggcaaatactcatcactcatagactta
atcgaacgcactagccaacgctttggcgataaaacggcatatgcttgtttggggaaaacc
agcagcttcaatgatatagagcgcgattcacgctatttttccgcctatttgcagaataac
actaacctaaaacccggcgatcggatcgcgattcaattacccaatattacccagttcgtt
atcgccgcctatggtgcgctgcgggcgggacttattctggtcaacactaacccgctctac
accgaacgagagcttattcatcagtttaatgactcaggtgctaaggccttagtggtgctt
tcggatctgttgccaacccttgccaaagtagttgcgaccacaccaattgaattagtgatt
tccactcacccattagatcttatcgatccgcaggtgcagcccaaaacggggcttaaaaat
gtcgaattttgccaagtgctaaaacaaggggcagagctgccctttaaccgaatagtccct
gccgcaggtgacttagcggcgctgcaatatacaggtggtacaacaggcctctccaagggc
gccatgctgacccacggtaatatgctcgccaatgcggcgcaggtaaaatcccgcatcggc
agcgttatcagcgaaggggaagatatttttgtcgcgccactgccgatttaccatatttac
gcctttatggtgaacttagttctgtattttgaatgtggtggttgctcggtattaatcccc
aatccccgtgatattagtggcttaattaagacactggcgaaatacccttttactggcttt
gcagggcttaacaccctctttgtcgccctgtgccatcagcccgaatttaaggcgctagat
ttcagtcatttaaaaatcactatttcgggtggtacggcactcaccgcggccgcagccaat
atctggcagcaaaccacgggcaataccatcagtgaaggctatggattatccgaaacctcg
ccggtgatttcactcaatgctcccggatatcaaaagattggcactatcggtaagcccgtt
ctcggcaccgaggtcaaactgttagatgaaaacggcaatgaagtcgcgcaaggggaagcc
ggcgaactcgctgcccgcggcccgcaagtgatgctgggttattggaataatctccaagaa
acggccaatgtaatgactgccgatggtttctttaaaaccggggatattgcgattttgaac
gaggaaggattccatcaaatcgttgatcgcaaaaaggatatgattatcgtctccggcttt
aacgtctatccgaatgaggtcgaaaacgtgctcgccagccatccgaatatcattgaatgt
gccgtggttggtgtaaaggatgaacactcaggagaagcggtcaaagcctttgttgtactt
aaggatgacagccaagatcatgagcaaatgaaaaccgccattatcaacttctgccgcgag
caactcaccgcctacaagctgcccaagttgattgagtttatgccacagctacctaagagt
accgtgggtaaaattctgcgccgagaattgaaacatcaggcttaa
DBGET
integrated database retrieval system
