Shewanella sp. MR-4: Shewmr4_0987
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Entry
Shewmr4_0987 CDS
T00388
Name
(GenBank) penicillin-binding protein 6. Serine peptidase. MEROPS family S11
KO
K07258
serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:
3.4.16.4
]
Organism
she
Shewanella sp. MR-4
Pathway
she00550
Peptidoglycan biosynthesis
she01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
she00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Shewmr4_0987
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
she01002
]
Shewmr4_0987
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
she01011
]
Shewmr4_0987
Enzymes [BR:
she01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
Shewmr4_0987
Peptidases and inhibitors [BR:
she01002
]
Serine peptidases
Family S11: D-Ala-D-Ala carboxypeptidase A family
Shewmr4_0987
Peptidoglycan biosynthesis and degradation proteins [BR:
she01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
Shewmr4_0987
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S11
PBP5_C
Beta-lactamase2
Beta-lactamase
DUF1132
Motif
Other DBs
NCBI-ProteinID:
ABI38067
LinkDB
All DBs
Position
complement(1153424..1154599)
Genome browser
AA seq
391 aa
AA seq
DB search
MMNFVKSPIKTLLLISSVSLPVYAAQPIVTPDAPTVAAKAYVLMDYYSGQIIAEENAYES
LNPASLTKMMTSYVIGQEIKAGNVSPDDDVTISKNAWSKNFSDSSKMFIEVGKTVKVSDL
NRGIIIQSGNDACVAMAEHIAGTEGAFVDMMNSWAKQLGMRDSYFENSHGLDSENHKSTA
YDMALLGAALIRDVPEEYRVYSEKYYTFNGIKQYNRNGLLWDNSMNVDGIKTGHTSGAGY
NLVASATKDGMRLISVVMGTQSEAARKAESKKLLTYGFRFFETVTPYKAGDSFVTQQIWY
GDKSTVDLGVATDTPITISRGRAKDLKANFELTKPLDAPLKKGETVGRLYFQLDGKDIAQ
FPLVTLQEVNEGSWFSKLVDYFKQLFSGWFS
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atgatgaattttgtaaaaagtcccattaaaacattgctgctaatttcgagtgtttctctt
cctgtttatgctgcgcagccgattgttacccctgatgcacctacagttgccgccaaggct
tacgtcttgatggattattactcgggccaaatcattgccgaagaaaatgcctacgaaagc
ttaaacccagccagcttaacgaagatgatgaccagttacgtgattggtcaagaaatcaaa
gccggtaacgtatccccagatgatgatgtgaccatcagtaaaaatgcctggtcaaagaac
ttctctgactcatcaaaaatgttcatcgaagtgggtaaaaccgttaaggtttccgactta
aaccgcggcatcatcatccagtcgggtaacgatgcctgtgtggccatggccgaacacatt
gctggcaccgaaggcgccttcgtcgacatgatgaactcatgggcgaagcagcttggcatg
cgtgacagctacttcgaaaactcccacggtttagactctgaaaaccacaaatcaaccgcc
tacgatatggcgttattaggtgccgcactgatccgtgacgtgcctgaagaataccgtgtc
tacagtgaaaaatactataccttcaacggtatcaagcaatataaccgcaacggtctgctg
tgggataacagcatgaatgtcgacggtatcaaaaccggccacacctctggcgcgggttat
aacttagttgcatctgccaccaaagacggcatgcgtttaatttcagtggtcatgggcacc
cagagtgaagccgcccgtaaagccgaaagtaaaaagctactgacctatggtttccgcttc
ttcgaaaccgtaaccccttacaaggcaggcgacagcttcgtaacccaacaaatttggtac
ggcgataagagcactgtcgatttaggtgttgctactgataccccaatcaccatcagccgt
ggccgtgcgaaagacttaaaagccaacttcgaactgactaagccactggatgcaccactg
aaaaaaggtgaaaccgttggccgcttatacttccagttagatggcaaagatattgcgcaa
ttcccactggttaccctgcaagaagtcaacgaaggcagctggttcagcaaattagttgat
tactttaagcaactgttttctggttggtttagctaa
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