Shewanella sp. MR-4: Shewmr4_1028
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Entry
Shewmr4_1028 CDS
T00388
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
she
Shewanella sp. MR-4
Brite
KEGG Orthology (KO) [BR:
she00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
she03016
]
Shewmr4_1028
Enzymes [BR:
she01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
Shewmr4_1028
Transfer RNA biogenesis [BR:
she03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Shewmr4_1028
Prokaryotic type
Shewmr4_1028
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
ABI38108
UniProt:
Q0HLF9
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All DBs
Position
1197764..1198717
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AA seq
317 aa
AA seq
DB search
MARRSKGRFIDGIVLLDKATGMSSNFALQRVKRFFNANKAGHTGALDPLATGMLPICLGE
ATKFSQHLLDSDKRYLVTAKLGQRTDTSDSDGEVVQTRPIEFTEAQLMSALEHFRGDTLQ
VPSMYSALKYQGQPLYKYAREGIEVPREARPITVFELNFISLEGDELTLDIHCSKGTYIR
TIIDDLGEMLGCGAHVIMLRRTQVAHYPYDKMVTLEQLEALVAKAQEEQLDPSSLLDSLL
LPMDTAVADFPEVNVPDASAAYLMQGQAVRVSGLVADKLVRITLGTERRFVGIGEMNEDG
LLAPKRLVVIHDQAKAS
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atggcgagacgttcgaagggtcgctttatcgacggtatcgtgttgttggacaaggccaca
ggaatgagctccaactttgcactacaacgagtaaagcgcttttttaatgccaacaaagca
gggcatacgggtgcactcgatccactggcaactggcatgctgccaatctgtttaggtgaa
gcgactaagttttcgcagcatttgctggattcggataagcgttatctggtcacagcaaaa
ctgggacaacgtacagatactagcgactcagacggtgaagtcgtgcagactcgcccgatc
gaattcactgaggcgcagttaatgtccgccttagaacatttccgtggcgataccctgcaa
gtgccatccatgtattctgcgctgaaataccaaggccagcccttgtataagtatgcccgc
gaggggattgaagtgccccgcgaggcgcgtcctatcactgtcttcgagctgaacttcatc
agtctagaaggcgatgagctgaccctagacattcattgctctaagggcacttatattcgc
actatcatcgatgatttaggtgagatgctcggttgtggcgcccatgtaattatgctgcgt
cgtactcaagtcgcgcattatccctacgacaaaatggtcaccttggagcaactcgaagcc
ttagtcgctaaggcgcaggaagagcagcttgaccctagcagcttgctggactcgttgttg
ttgcctatggataccgcggttgccgactttcctgaagtgaatgtgcctgatgcgagcgca
gcttacttaatgcaaggtcaggcggtacgtgtctcaggactcgttgcagataagttggtg
cgcattacgttgggcactgagcgtcgtttcgtcggaattggcgagatgaacgaagatggt
ttactggcgcctaagcgcttagtcgtgatccacgaccaagctaaagcatcttaa
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