Shewanella sp. MR-4: Shewmr4_1775
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Entry
Shewmr4_1775 CDS
T00388
Name
(GenBank) exodeoxyribonuclease V, gamma subunit
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
she
Shewanella sp. MR-4
Pathway
she03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
she00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Shewmr4_1775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
she03400
]
Shewmr4_1775
Enzymes [BR:
she01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Shewmr4_1775
DNA repair and recombination proteins [BR:
she03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Shewmr4_1775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
ABI38849
LinkDB
All DBs
Position
complement(2104938..2108648)
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AA seq
1236 aa
AA seq
DB search
MLKLIQSNQMEVLCAHLAAYLRQPLPGAGLLQNEHILVQSPGMSTWLRLEIAKQNGIAAA
LEFPLPSSFIWQLCHDLLPNVPKENAFTKAAMTWKLMQLLPRLLDEPSFGPLRHYLGHTL
DNLESSAADTHSNHQHGAVSADDIKLYQLCGRIADIFDQYLVYRPDWIAAWEANEPLESL
KLNEEQSWQPILWRALIAYNRDELRQSHYHRANLHQDLIAALGDSTNSLAKLPQRLFVFG
ISSMAPQTIDVLHQLASRIDVIILSLSPCQHYWGDIIDPRHRARMALQYAGKRQLAEQWE
DKLEVGNPLLANNGKMGRELLDMLLELPPEHCDFGDDVYCEPCGDPNDPHARASMLAGVQ
YDILEMQTLDRVLGPDAELYQEVANRRVLTADDDSIQIKSCHSPLREVETLHDHLLDLLD
SDNQLTPKDIVVMMPDVAAYAPYIDAVFAAKQGLEYIPYAIADRGAAQESPLINSFLNLL
NINQSRFGLTDILSILEVPAILRRFQLEEDELPLIRRWLDEAGVRWGRDEQSRLKQGVPA
FEQNSWAFGIKRLILGYALRDDAPLYQSSPPGMHYLTVAGVEGQSAQALGKLLNFIEVLD
ETTQVLAKAQAPSLRLLELTELLNAFYAPDEDEREQLQEIRDAIAALEQELLAASPADIG
PQANDLDLSIEVLALWFNQRLTESRVGQRYLAGSVNFCTLMPMRSIPFKVVCLLGMNDGV
YPRVQHPVGFDLMAHFGARKGDRSRRLDDRYLFLEALLSAREQLYISYIGRSERDNSERI
PSMLVSELIEYCQLCYLPESLAAEASTVNNEDAQQALLEAIVSHQPLQPFDPKLYQAALP
QAPASHGIKQSYSQQWCPPDSNSQLQHGRFIEAHTQIVLEDDTLSGSDAQQDIEPLGEAE
HVDISAFIRFFRNPAQYFFNRTLKVDLNLNIQADDNDEPFSLNALERYLLQAQLLGDALE
QGQNEPSTELLQRLKASGNLPMQPFDDLLLRQYSHDIAPLIGRTLFMRGDVAPRHADIRL
SFELPHQNAGTQLKAKRVILEGRIDDISPKGLVTCRPGSAHGRDILALYLRHLCLMAAGV
AQPSYLQSSYLLDMGHFHALAPITPALAHAQLANLLQLFYQGQIHPLCFMPRTSLAYASA
GADEEEDPHPSKDPHKARLEAAQSEWLDEQGELGEGTDPHYQRLFHFPDDFTEAHFGKLA
DDIYRPMLSLYHKDTLAQLEEFALNEAPTATTGGAD
NT seq
3711 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagttaatccaatccaatcaaatggaagtgctctgtgcccatcttgccgcgtat
ttacgccagccgctacccggcgcggggttattgcaaaatgagcatattttggtgcaaagc
cccgggatgtcgacttggttacgccttgaaattgcaaaacaaaatggtattgccgccgcg
ctggagttcccgctaccttccagctttatttggcaactgtgccacgatttactccccaat
gtccccaaggaaaacgccttcactaaggcggcaatgacctggaagctgatgcaactactg
ccgcggctactggatgaaccttcctttgggccactgcgccattatttgggtcatacctta
gataatctggaatcgagcgcggctgacacccatagcaaccatcaacatggtgccgtaagc
gccgatgatattaagctttaccaactttgcggccgcatcgccgatatcttcgaccaatat
ttggtttaccgccccgactggattgccgcgtgggaagccaatgaaccgcttgagtcactc
aaattgaatgaggagcaaagctggcaacccatcctctggcgcgcgctgattgcctacaat
cgcgatgagctgcgtcaaagccactaccacagggccaatctacatcaggatttgattgct
gcattgggggatagcaccaattccctcgcaaaattgccgcagcgtttatttgtgtttggg
atctcctctatggcgccccaaaccatcgatgtgctccaccagctcgcgagccgtatcgat
gtgattatcttaagccttagcccctgtcagcattactggggcgacattatcgacccacgc
catcgggcgcgtatggcattgcaatatgccggaaaacgccaattagccgagcaatgggaa
gataaactcgaagtcggcaatcccctactcgccaacaatggcaagatgggccgcgaatta
ctcgatatgctgctcgaactgcccccagagcactgtgactttggcgacgatgtgtactgc
gagccctgcggcgatcctaacgatccccacgctcgcgccagcatgctagccggggtgcaa
tacgatattttagaaatgcagacactcgatcgcgtactcgggccagatgctgagctatat
caagaagtcgcgaatcgccgggtattaacagccgacgatgattcaattcaaatcaagagt
tgccacagcccacttagggaagtcgaaaccctgcacgatcatttactcgacctgctggat
agcgacaaccaactcacgcccaaagacatagtggtaatgatgcccgatgtcgccgcctac
gccccctatatcgatgcggtgtttgcagccaaacagggactggaatatatcccctatgcc
attgccgaccgcggcgcggcgcaggaatcgccactcattaatagctttttgaatttactc
aatattaatcagagccgtttcggactgacggatattttaagcattctcgaagtcccagcc
attttgcgacgttttcagctcgaagaagacgagctgccactcattcgccgctggttagat
gaagcaggtgtgcgttggggccgggatgaacagagccgccttaaacagggcgtgcctgct
ttcgagcaaaactcctgggcctttggtataaaacgcttaatcttaggttacgccttaagg
gacgatgcgccgctatatcagtcatccccgccgggaatgcactatttaacggttgctggg
gtggagggccaatcggcacaggcccttggcaaactgttgaattttattgaagtcctcgat
gagaccacccaagtattagccaaggcgcaagcgccctcactgcggttactcgaactcacc
gagctgttaaatgccttttacgcccccgatgaggacgagcgtgagcagctgcaggaaatt
cgcgatgcgattgccgccttagagcaagagctgcttgccgccagcccagccgatattggc
ccgcaagccaacgacttagatttaagcatcgaagtgttggcgctctggtttaatcaacgc
ttaaccgagtcacgtgtcggccaacgatacctcgcgggcagcgtgaatttttgtacctta
atgccgatgcgctcgattcccttcaaggtggtttgtctgctggggatgaatgatggtgtc
tatcctagggtgcaacatcctgtgggctttgatctgatggcccattttggtgcgcgcaaa
ggcgatcgttcccgtagattagatgatagatacctgtttttagaggcgttactctcggcg
cgggagcagctttacatcagttatattggccgtagcgaacgggataactcggagcgtatt
ccatctatgctggtctccgagctaatagaatattgccagctatgctatttacctgaatcc
cttgcggcagaagcttctactgtcaataacgaagatgcccaacaggcattgcttgaggct
attgtgagccatcagccgctgcaaccttttgatcctaaactgtatcaagcagcactgccg
caagcccccgcctcccatgggataaaacagagttatagccagcagtggtgtccgcccgat
agcaatagccagttgcagcatggccgatttatcgaagcccatacccagatagtgctcgaa
gatgacactctaagtggcagtgatgcacaacaggatattgagccccttggcgaagcagag
catgtggatatctcggcctttattcgcttctttcgcaatcccgcgcagtatttctttaat
cgtaccctaaaagtagatttaaacctgaatattcaagcggatgataacgatgagcccttt
agtcttaatgcgttagagcgttatttattacaggctcagctccttggcgatgcgcttgag
caagggcaaaacgagcctagtactgaactgttacaacgccttaaggccagtggcaatttg
ccaatgcagccctttgatgatctgctgctgcgccaatacagccatgatatcgcgccgctg
attggcagaaccctgtttatgcgcggcgatgtcgctcctcggcatgccgatattcggctc
agctttgagttaccccatcagaatgcagggacacagttaaaagccaagcgggtgatcctc
gaaggtcgaatcgatgatatcagccctaaaggattggtcacttgccgacccggcagtgcc
catgggcgggacattttagccttgtatttgcgtcatttatgtttgatggccgcaggagtg
gctcaacctagctacctgcaatcaagctatctgctggatatggggcattttcatgccctc
gcgcccattacgccagcgcttgcccatgcacagctcgccaacttattacagcttttttat
cagggccaaattcatcccctgtgttttatgccaagaacctcactcgcctatgccagcgct
ggggcggacgaagaggaagacccgcacccaagcaaagacccgcacaaagcccggctcgaa
gcggcgcaaagcgaatggctggacgagcaaggtgaacttggcgaaggcacagatccccat
taccagcggctgtttcattttcccgacgactttaccgaggcacattttggcaagctcgcc
gatgacatctatcggccaatgcttagcctgtaccacaaggataccctcgcccaactcgag
gaatttgccctgaatgaagccccaaccgccacgacagggggagcagactga
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