Shewanella sp. MR-4: Shewmr4_1831
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Entry
Shewmr4_1831 CDS
T00388
Name
(GenBank) Peptidoglycan-binding domain 1 protein
KO
K21470
L,D-transpeptidase YcbB
Organism
she
Shewanella sp. MR-4
Brite
KEGG Orthology (KO) [BR:
she00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
she01002
]
Shewmr4_1831
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
she01011
]
Shewmr4_1831
Peptidases and inhibitors [BR:
she01002
]
Cysteine peptidases
Family C82
Shewmr4_1831
Peptidoglycan biosynthesis and degradation proteins [BR:
she01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
Shewmr4_1831
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
ABI38905
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Position
2174007..2175635
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AA seq
542 aa
AA seq
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MMPVSRLTLNPNTSNRSFSSLKRWPLGALLMGLSLAVIESYAAEPLVTAPLSVEPQTVEL
PAPPPSAEVADPDTAVELILGQTLLLSLADVSPVFSANYQQLSQWQHRVLDSEERTKLRQ
MQLQLDNYWRYLDTQAECITPCRSAALMPTDAYFRAVVLKLKQLMALAESSSWETLILED
KLSPGQESPLIALIVQRLFLLGFLADKPSPVSETAADPEALSPDVTTHPESKAYPAQGSA
DKNPMLYNDELVAAIKVFQTQHGLQADGVIGKQTLYWLNQSPYARAQLLAKNTLRQQIFT
RTLPASYLVINVPAFELQFVEAGKVILNSKVIVGKASRPTPLLSSHISSVVVNPQWRVPR
TIVRRDILPHIRQDGHYLQDRGFDVYDYDGARVEHSPQEWQELASSHFPYRLVQRPGAKN
ALGRYKFHFDNSFSVYLHGTSEPSLFKKTDRALSSGCIRVEKVEELARWFQTHLVKDTRL
WDKLTPNTTQSQWFALSDTMPVYTVYWTAWLDDAGQIQYRNDIYHLEAEFTQAVPASIFY
IL
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgatgcctgtgagtcgattaacgctaaatcctaatacatccaaccgcagctttagttca
cttaagcgctggccactcggtgcattgttgatgggactttcgcttgcagtcatagaatcc
tatgccgccgagccactggtaacagcacctctaagcgttgaaccacaaacggttgagctg
cccgctcctccgccttccgctgaagtcgctgacccagacactgcagttgagctaattcta
gggcaaaccttactcttgagtcttgccgatgttagccctgtttttagcgccaattatcaa
cagttgagccagtggcagcatagagtactggatagcgaagagcggacgaagcttcgccaa
atgcagctgcaactggataactattggcggtatctcgatacccaagctgaatgcatcacg
ccgtgcagatcggctgcattgatgccaacagatgcgtattttcgcgctgtggttctcaag
ctgaagcaattgatggcgttagcggaatcctcttcgtgggagacgctcatcctcgaagat
aaattaagcccggggcaagagagtcctctcatcgcattaattgtgcagcgtctttttcta
ttaggctttctggcagataagccaagtccagtttccgagacagcagctgatccagaagcg
ctttcgccagacgtaacgactcaccctgaatcaaaggcgtatccagcccaaggttctgct
gacaagaatcccatgctttataacgatgaactcgttgccgcaattaaagtctttcaaact
caacatggcttacaagcagatggggtgataggtaagcagaccctgtattggcttaatcaa
tctccctatgctcgggcgcagttactggcgaaaaacacccttaggcagcagatttttact
cgcaccttacctgcaagctatctggtgataaatgtcccggcatttgagttgcaattcgtc
gaagcggggaaggttatcctcaattcaaaagtaatagtgggcaaagcatcgcggccaaca
ccgctgctaagtagtcatatctccagcgtggtggtcaatccacagtggcgcgtgccacgc
accatagtgcggcgcgatatcttgccccatatacgccaagatggtcattacctgcaggac
cgcgggttcgatgtttacgactatgacggcgcgcgagtcgaacattcgccacaggagtgg
caagagttggcgtccagccattttccctatcgtttagtgcaacgccccggggcgaaaaac
gccttaggtcggtataaatttcatttcgacaacagttttagtgtgtatttgcacggaact
tctgagccaagtctctttaaaaagaccgatagggccttatcatcgggttgcattcgggtt
gaaaaggtcgaggagctggcccgctggtttcagactcacttagttaaagatacgcgcctt
tgggacaaattaacgcctaataccactcaatcccaatggtttgcgttatcagataccatg
cctgtctacacggtttattggacagcatggcttgatgatgctgggcaaattcaatatcgc
aatgatatttatcacttagaagctgagtttacccaggcggtgcctgcatcaattttttac
attctataa
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