Shewanella sp. MR-4: Shewmr4_2176
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Entry
Shewmr4_2176 CDS
T00388
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
she
Shewanella sp. MR-4
Brite
KEGG Orthology (KO) [BR:
she00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
she03016
]
Shewmr4_2176
Enzymes [BR:
she01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Shewmr4_2176
Transfer RNA biogenesis [BR:
she03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Shewmr4_2176
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
ABI39249
LinkDB
All DBs
Position
complement(2603622..2604776)
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AA seq
384 aa
AA seq
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MFLWNVINPQELEKNLSVFQYVSDEASLNALVAQYQQSPLLVLDTEFVRTRTYYAKLGLI
QAYDGKTLALIDPVALPDLSAFWSLLDNPNIIKLVHSCSEDLEVFAHYGQRQPTPLFDSQ
IAASLCGMGHGLGYAKLVETCLGEVIDKGESRTDWMRRPLTEAQLSYAANDVLYLYQLYP
QLADKLKAQDRLGWLYEEGERMTEGRLAPPDMDTAYLRVKNAFQLTENQLAYLKVLAKWR
LEKALARDLALGFVIKDHGLIALAKKQPKSMSDLLKLNDLTEQEKRIHGKDILRVMQTAD
LNNPPELVDVLALKPGYKSAFKNIKTCLTELCEQHAIPMEMLGSKRHIHEYLQWRWDKQQ
GELPTVLSGWRGQIAAESLAKLEV
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
ttgtttttatggaatgtgattaacccacaggaactggagaagaatttgtcagtgtttcag
tatgtgagcgacgaagcgagcctcaatgccctcgtagctcaatatcaacagagtccgctg
ctcgtattagataccgagtttgtgcgcacacgtacctattacgctaagcttggccttatt
caagcctatgatggtaaaaccttagccttaattgaccctgttgccttacccgacctcagt
gcattctggtctttgctggataatcctaacattatcaaactagtgcactcttgcagtgag
gacttagaggtcttcgcccactatggtcagcgtcaaccaacgcccttattcgatagccaa
attgccgcctctttatgtggcatgggccatggcctgggttatgccaagttagtggaaacc
tgtttaggtgaagtgattgataaaggtgagtcgcgcaccgactggatgcgccgccctttg
actgaggcgcagcttagctacgccgccaacgatgtgttgtatctgtatcaactctatccg
caactcgccgacaagcttaaagcgcaagatcgcttaggctggctgtatgaagaaggtgag
cggatgacagaagggcgcttagcgccgccggatatggatactgcgtacctgagagtcaaa
aacgcttttcagcttaccgagaatcagctggcttaccttaaagtgctggcgaagtggcgt
ttagaaaaagccttagcgcgggatttagccttgggctttgtgataaaagatcatggtttg
attgctcttgcgaagaaacaacctaagagcatgagtgatttgctcaaactgaacgatttg
accgagcaagagaaacgcattcacggtaaagatattttacgggtgatgcagaccgcggat
ttaaacaatccaccagaattagtggatgtcttagcgctcaaaccaggttacaaatcggcc
tttaagaacataaaaacctgcttaactgaactgtgcgagcagcatgccatcccgatggaa
atgctaggctcaaaacgtcatattcatgagtatttacaatggcgttgggataagcagcag
ggtgagttaccgacggtcttgagtggttggcgcggacaaattgccgccgaatcgttggca
aagcttgaagtttaa
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