Shewanella sp. MR-4: Shewmr4_2177
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Entry
Shewmr4_2177 CDS
T00388
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
she
Shewanella sp. MR-4
Pathway
she00061
Fatty acid biosynthesis
she00071
Fatty acid degradation
she01100
Metabolic pathways
she01212
Fatty acid metabolism
she02024
Quorum sensing
she04146
Peroxisome
Module
she_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
she00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Shewmr4_2177
00071 Fatty acid degradation
Shewmr4_2177
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Shewmr4_2177
09145 Cellular community - prokaryotes
02024 Quorum sensing
Shewmr4_2177
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
she01004
]
Shewmr4_2177
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
she04147
]
Shewmr4_2177
Enzymes [BR:
she01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Shewmr4_2177
Lipid biosynthesis proteins [BR:
she01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Shewmr4_2177
Exosome [BR:
she04147
]
Exosomal proteins
Exosomal proteins of breast milk
Shewmr4_2177
Exosomal proteins of breast cancer cells
Shewmr4_2177
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Pept_S41_N
Motif
Other DBs
NCBI-ProteinID:
ABI39250
LinkDB
All DBs
Position
complement(2604802..2606475)
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AA seq
557 aa
AA seq
DB search
MDQPWINHLPKDVPAEINVDQYSSLVDMFETAVAKYADQPAFINMGATLTYRKLEERSRA
FAAYLQNELKLQKGDRVALMMPNLLQYPIALFGILRAGMVVVNVNPLYTPRELKHQLVDS
GAKAIVVVSNFARTLEEVVEQTPVKSVIITSLGDQLSAPKRTLVNFVVKYIKKLVPKYDL
PHALSMRETLSRGRRMQYVKPVITGDDLAFLQYTGGTTGVSKGAMLTHRNVVANVLQANG
AYSPALRDGSEFVVTALPLYHIFALTVNCLLFLHKGSQNLLITNPRDIPGFVAELKKYPF
TALTGVNTLFNALVNSSDFAELDFSRLKLSIGGGMAVQKAVADKWQSITKTRLLEGYGLT
EASPLLTCCPYNLDGYNGSIGFPAPSTLIQVRDDAGNVLPQGETGELLGKGPQIMKGYWQ
RPEETAKVIDKDGWLATGDIGYMDEQGFFYIVDRKKDMILVSGFNVFPNEVEEVVALHPK
VIEVAAVGVPNDASGELVKVFVVAKDKSLTADDIIKHCRAHLTGYKVPKLVEFRDELPKT
NVGKILRRELRDEVKRA
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
gtggatcagccttggattaatcatttgccaaaagatgtgcctgctgagattaatgtggat
cagtattcatcactcgtcgatatgttcgagacagcggtggctaaatatgcggatcaacca
gcatttatcaacatgggagctacgctaacttaccgtaaacttgaagaacgcagccgcgcg
tttgccgcctatctgcaaaatgaattaaagctacaaaagggtgaccgcgttgccctgatg
atgccgaatttgctgcaatatcccattgcgctgttcggcattttacgtgcgggcatggta
gtggttaacgttaacccactttacactccgcgcgaattaaagcaccaattagtcgactcg
ggcgctaaggctattgttgtggtatcgaactttgcccgtaccttggaagaagttgtcgaa
cagacacctgtaaaaagcgtgattatcacaagtttaggtgaccaactcagtgcgccaaaa
cgcaccttagttaactttgtggttaaatacatcaaaaaactagtgcctaaatacgatcta
ccccatgcactctcgatgcgcgaaaccctctcaagagggcgccgtatgcagtatgtcaaa
ccggttatcacgggtgatgacttagcctttttgcaatacacaggtggtacgactggggtg
tcaaagggcgccatgttgacccacagaaacgtggtcgcaaacgtattgcaggcgaatggg
gcttactccccggcactacgtgatggcagtgagtttgtggtcactgccttaccgctttac
catatttttgcattaacagtgaactgcttactgtttttacataagggcagtcagaacctg
ttaatcactaaccctcgcgatattccagggtttgtggctgaactcaagaaatatcctttt
accgcgctgacgggcgtcaacaccctgtttaatgcgttagtgaacagtagcgattttgct
gaactggacttttctcgcctcaaattatccattggtggcgggatggcggtacaaaaagcc
gtagccgacaaatggcagagcatcaccaaaacccgcttactcgaaggttatggtttaacc
gaagcgtcaccgctactcacatgctgcccctataacttagatggctacaacggttctatc
gggttcccggcaccatcaaccttaattcaagtacgtgatgatgcgggtaatgtgttaccg
caaggtgagacgggtgagctgttgggtaaaggcccacaaatcatgaaaggctattggcag
cgtccagaagagaccgccaaagtgattgataaagacggctggctcgccacgggcgatatc
ggttatatggatgaacaaggtttcttctatatcgtcgatcgtaagaaagacatgatttta
gtttcgggcttcaacgtcttccccaatgaagtcgaagaagtggttgctttgcatcctaaa
gtcattgaagtggccgcagttggggtaccaaatgacgcgagcggtgaattagtaaaggtg
tttgtggtggcaaaagataaatctttaaccgctgacgacatcattaagcattgccgcgcg
catttaacgggatataaagtaccgaagctggtagaatttagggatgagttacctaaaacc
aacgtgggtaagatcttgcgacgagagcttcgagacgaagtgaagcgcgcgtaa
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