Shewanella sp. MR-4: Shewmr4_2254
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Entry
Shewmr4_2254 CDS
T00388
Name
(GenBank) DNA polymerase III, subunits gamma and tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
she
Shewanella sp. MR-4
Pathway
she03030
DNA replication
she03430
Mismatch repair
she03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
she00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Shewmr4_2254
03430 Mismatch repair
Shewmr4_2254
03440 Homologous recombination
Shewmr4_2254
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
she03032
]
Shewmr4_2254
03400 DNA repair and recombination proteins [BR:
she03400
]
Shewmr4_2254
Enzymes [BR:
she01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Shewmr4_2254
DNA replication proteins [BR:
she03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Shewmr4_2254
DNA repair and recombination proteins [BR:
she03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Shewmr4_2254
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNA_pol3_gamma3
DNA_pol3_tau_5
DNAX_ATPase_lid
AAA
AAA_22
RuvB_N
AAA_5
AAA_16
PIF1
AAA_14
ResIII
TsaE
AAA_2
AAA_18
RCF1-5-like_lid
AAA_assoc_2
nSTAND3
Adeno_E1B_55K_N
Motif
Other DBs
NCBI-ProteinID:
ABI39325
LinkDB
All DBs
Position
complement(2695591..2698806)
Genome browser
AA seq
1071 aa
AA seq
DB search
MSYQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAK
GLNCEKGVTASPCGVCGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRF
KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQ
QEIGTQLQHILTQEQLPFEHEALTLLAKAANGSMRDALSLTDQAIAFGGGTVMLNQVQSM
LGSIDEQHVLRLLKALTDADIGVLMQSCAQVLAYGADAQEVLRSLLELLHQITLTQFAPA
AAQQSLYSAQIQAFAEQLAPEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVAFVPE
KPVKRWQVEDAAKVSLPAQQPSTIPAATEQAVNRVENQAEAEKKTPLTSTVDSQPAATEA
VQSGFMSEPSVADPTLPQPEISKASQASQALVAEAAQQLLSDEDVSAVDGDDTAGEESAL
NAALIAEQQVILSQAQSQGFGASTEVVSSTEAVLISESSPNSKTDASSESSPEPSSVSTP
VSNLDAEHNQAAMMDSASIAQKPSAAALTATVALSYDDAEENIQAGANQSTDALASDEYS
AEDYGQYDYAAAPLDAYQDDYSQFMVEEQGRFSGMEDSSLMSDSIQSIDHSDVVHEPAAA
APKSQSFADNSVSTTPPVSTATVSLEDDDILSAVLAARDSLLSDLDALSTKEGDGKKLAT
EVKVKTPSQNVHTAPATKASASTPSETKTASGEAENDFELPFDDDFEIESLFEAQAGVIN
ASLPAHVAPAPHPQFDPNDRPPWEEAPVDTLADVEPVATSYQGSETARAPQVSQTPQPII
APQEPELATGIAHSASIPTLPTDTGAANTKTANSEETRVEQAIAPHPQRDTAAQPVTQTQ
TPPQSSEETQQSAPSTALTLAQSITGHPLDLHWYKLMASLEIGGRVRQLAVNSICQLQAN
PLPLLLKPDQKHLSAPVAIEQLEQALTAALGNPRQVEVVIGIDPTRETPLELRKRFHQEL
LQQARQSLMMDDNVQWLINRFGAELDQDTLVYPPELLAQRSGLIPALPEPE
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atgtcatatcaggtgttagccagaaaatggcgccctgccacattcgaacagatggtcggc
caaagccacgtgttgcacgcgctcacgaatgcgttaacgcaacaacgtttacaccatgct
tatctttttacgggtacacgcggtgtgggcaagaccagtttggcgcgcctcttcgccaaa
ggcctcaactgtgaaaagggcgtaacggcatccccctgtggtgtgtgtggcagctgtgtc
gaaattgcccaaggccgctttgttgacttgatcgaagtcgatgccgcctcgcgtactaaa
gtcgatgacacccgtgaactcttagataatgtgcaatatcgtccgacccgtggccgtttt
aaggtctacctgattgacgaagtgcacatgctctcccgcagcagttttaatgcgctgcta
aaaaccctcgaagaaccgccagagcatgtgaaatttttactggcgacgaccgatccgcaa
aagctgccggtgactgtgttatcccgctgtctgcaatttaatttaaagagcttaacccag
caggaaattggcactcagctacagcatattttaacccaagagcaattgccctttgagcac
gaagccttaactctgctcgccaaagcggccaatggcagtatgcgtgatgccttaagtttg
accgatcaggccattgcctttggtggtggcacggtaatgctcaatcaagtgcaatctatg
ctgggcagcatcgatgagcagcatgtgctgcgcttactcaaagccttaaccgatgccgat
attggcgtcttgatgcaaagctgcgcacaggtgctcgcctatggcgcggacgcccaagaa
gtgctgcgcagtttactggaattattgcatcaaattaccctgactcaatttgcacctgct
gcggcgcagcaatccctttatagcgcacaaattcaagcctttgccgagcagttagcgcct
gaacaagtgcagttgtattaccagattttactgactggccgtaaagacttaccccatgcg
ccggatcctaaatcgggcctcgaaatggcgttactgcgtgcggtggcatttgttcccgaa
aagccagtaaaacgttggcaggttgaagatgctgctaaggtgagcttgccagctcagcag
ccttcgaccatacctgctgcgacagagcaggcagtgaatagggtggaaaatcaggcagag
gctgaaaaaaaaactccgttaacttccaccgttgactcacaacccgcggcaacggaagcg
gttcagtctgggtttatgtcagaaccaagtgttgcagaccccacgcttcctcagcccgag
atctctaaggcttctcaagcttcacaagcgttagtagccgaagccgcgcagcagctttta
tccgatgaagatgtatcagcagtcgatggagatgatacagctggtgaagagtcagcactc
aacgcggcattgattgccgagcagcaagtgatcttaagccaagcccaaagccaaggtttt
ggcgcaagtaccgaggtggtatcgagtactgaagccgtcttaatttcagaatcaagccct
aattcaaaaactgacgcaagctctgaatcaagccctgaaccgagctctgtttctacgcct
gtatcgaatcttgatgctgagcataatcaagctgcaatgatggattccgctagtattgct
cagaagccttctgctgcggcattaacagcaactgttgccttatcttatgatgatgccgag
gaaaatattcaagcgggtgctaatcagagtacagatgcgctagcgtcagatgaatattct
gcagaggattacggacaatacgattatgccgccgcgccgctcgatgcctatcaggatgat
tattcgcaatttatggttgaggagcagggcagattctctggcatggaagatagctcgttg
atgagcgacagtattcagtctatcgaccatagtgatgttgtgcatgagcccgctgctgcg
gcccccaaatcgcagtcttttgccgacaattcagtttcaacaactcctccggtttcaaca
gctactgtgtccctcgaggatgacgatattttatcggcggtattagcggcgcgagactcc
ttgttatccgatcttgatgcgcttagcaccaaggaaggtgatggaaaaaagctggcaacg
gaagttaaggttaaaaccccgagccagaacgtgcatactgcgccagcaactaaagcgtct
gccagtacaccttcagagacgaaaaccgccagtggtgaggccgagaatgattttgagctg
ccctttgacgatgattttgagatcgagagcctttttgaagctcaggcaggagtaataaac
gcttcactacccgctcatgttgcgcctgcgccacatccgcagttcgatcccaatgatcgt
ccgccatgggaggaggcgccagtggatactctagccgatgtcgaacccgtagcaacttct
tatcaagggagtgaaaccgcgcgcgcgccgcaagtcagccagacaccacagccaattatc
gcgcctcaagagcctgaattggcgactggaattgcgcattctgcctcaattcctactctg
cctactgataccggggcggctaataccaagacggctaatagtgaagagactcgggttgag
caagcgatagcgcctcatccacaaagagatacggcggcgcagcccgtgactcaaacccag
accccgccacagtcaagcgaggagacgcaacaatctgcaccatccacagcattaaccttg
gcgcaatcgattaccggtcatcctttagacttgcactggtataagctcatggcgagccta
gagattggcggccgtgtgcgacagttggcggtaaactcgatttgtcagctgcaggctaac
cctttgcctttgttgctaaaacctgatcaaaaacacttgtcggcgccagtagcaattgag
cagctggagcaagcattgacggccgcattggggaacccaaggcaagtcgaggtggtcata
ggaatcgatcccacacgggaaacgcccttagagctacgtaagcggttccatcaagagttg
ctgcaacaggcgcgtcaatccctgatgatggacgataatgtacagtggctgattaaccga
tttggggccgagcttgatcaggacactttggtttatccgccagaattgttagctcagcgt
agtgggctcattcccgcactgcctgagccagagtga
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