Shewanella sp. MR-4: Shewmr4_2405
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Entry
Shewmr4_2405 CDS
T00388
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
she
Shewanella sp. MR-4
Pathway
she03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
she00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Shewmr4_2405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
she03019
]
Shewmr4_2405
03009 Ribosome biogenesis [BR:
she03009
]
Shewmr4_2405
Enzymes [BR:
she01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Shewmr4_2405
Messenger RNA biogenesis [BR:
she03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Shewmr4_2405
Ribosome biogenesis [BR:
she03009
]
Prokaryotic type
rRNA processing factors
Shewmr4_2405
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ABI39476
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All DBs
Position
2864659..2867940
Genome browser
AA seq
1093 aa
AA seq
DB search
MKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAMADLEVPAGMGLIVRTAGVGKESTEL
KWDLKVLQHHWAAITEAAQSKAAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEA
KQHIALVRPDFVERVKLYEAEVPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLRDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTESLAL
SILRLMEEEAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDPHMMTP
DYRVIRHRTDDEIDESSYKRIEQPEAKLYEPRKLERTAAPAPALKGFTAPQKVEQAAAPV
ANKVEATEPGFFSKLFSAIGAFFSSSDKPAAEKTTETKKSDSQTANANRRNRRNDTRRTR
NNQDADKAKEGTREPRTRNAKKSADAPQAQERPAREKDENAKRTKPEPKSRNQAPKEVVA
ESQDDTPKQEVARERRQRRNMRRKVRIDNANETTEAPIQEEVVLAEVAAVNAANTDVATE
PQAETKAPRSRRQPRKDAAVANETVEATDAASQVEANAEVSAEKPVVENRAEAPADVTEV
KTEAETDADNAELSADADDKAKRESRDGQRRSRRSPRHLRAAGQRRRRDEDEQGVSAPAQ
FVPNDALGDAQDYPAPTAQTAEAAETTEAKATEVAAEPTVTSPAAVVETADVSVVAETNK
AVETEVVESVATEQVAKLKAEVAVTEAPADTAVNNKPETSVKAEDVAVEPAKAVEAVTEA
IVTPAETPVAQAKTETVAVEAVAPEVEKAEVKDAVKSVASAPMAKPAPIVKPQAKPVVTQ
AVAAPAAETVVSKPKAASRFGSMVSSEMTKPTVEVRTQVEVPKGREYDNTASAEVTAPKL
KQSNSAESDMARP
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttaatcaatgcaactcaatcagaagagttgcgtgttgccctcgttgac
gggcaacaactgtacgatctggatattgaaagtcctggtcacgagcaaaaaaaatccaac
atttacaagggtaaaatcacccgcgtagaaccctctttagaagccgctttcgttgactat
ggtgccgagcgccacggcttcttaccgctaaaagaaatcgccagagagtacttccctaaa
ggttattctttccaaggtcgcccaaacatcaaagaagtggtcagtgaaggacaagaagtt
attgttcaaattgacaaagaagagcgcggcaacaaaggtgctgcactgacgacctttatc
agccttgcaggttcttacttagtcctgatgccaaacaaccctcgtgctggcggtatttct
cgccgtatcgaaggtgatgagcgcaccgaattaaaagaggccatggccgatttagaagtg
cccgcaggtatgggacttatcgtgcgtaccgcgggtgttggcaaagaatcgactgaactg
aagtgggacttaaaagttctacaacaccactgggctgccattaccgaagccgcacaaagt
aaagccgctcctttcttaattcaccaagaaagtaacgtcattgtacgtgcaattcgtgat
tatctgcgccgtgatgtgggcgagatcctcatcgaccaccctcgcatttttgaagaagcc
aagcagcatatcgcactggtacgccctgatttcgtcgagcgcgtaaaactctacgaagcc
gaagtgccattgttcactcacttccaaatcgagtcgcaaatcgaatcggcattccaacgt
gaagtgcgcctgccatcgggtggttcgattgttatcgacccaactgaagcattaacctca
atcgatatcaactctgcccgcgcaacgaagggcggcgatattgaagaaaccgcattaaat
accaaccttgaagccgccgatgagattgcccgtcaattgcgtctgcgagacttaggtggt
ctggtcgtgatcgactttatcgatatgacgccagtgcgccatcaacgtgaagtagaaaac
cgcctgcgtgatgccgtgcaccatgaccgtgcccgcgtacaattaggccgcatttctcgc
ttcggtctgatggaaatgtcgcgtcaacgtctgcgtccatccttagaagaatcagctgca
catatctgccctcgctgtcatggccaaggcacgattcgtagtaccgaatctttagcgctg
tcgattctgcgtttgatggaagaagaagccatcaaggaaaacacctcacaaatcgaagcc
atcgtgcctgtcgatgtggcggccttcctgctgaacgaaaaacgcaaagcgattcgtatc
actgagcaacgccatgatgtagaagtctatgtgatcccagatccgcacatgatgactcct
gattatcgcgttattcgtcaccgcactgacgatgaaatcgatgaatccagctacaagcgc
atcgaacagccagaagctaagttatacgaaccccgtaaactggaacgcactgctgcgcca
gcaccagccttaaaaggcttcaccgcaccgcagaaagtcgaacaagccgctgcacctgtt
gccaacaaagtggaagcaaccgagccaggtttcttcagcaaactgttcagtgccattggc
gccttcttcagctcaagcgataaacctgcggcagaaaagaccacagaaaccaaaaagtct
gacagccaaacggccaatgcgaaccgtcgtaatcgtcgtaatgacactcgccgcactcgc
aataaccaagatgctgacaaagcgaaagaaggcacccgcgagccacgcactcgcaatgcc
aagaagtcggctgatgcacctcaggctcaagagcgcccagctcgtgaaaaagatgagaat
gcaaagcgcactaaaccagagcctaagagtcgtaatcaagcaccaaaagaagtggtagcc
gagtctcaagacgacacaccaaagcaagaagtggcccgtgagcgtcgtcagcgccgtaac
atgcgtcgtaaagtacgcatcgataacgccaatgaaacgaccgaagcgccaattcaagaa
gaagtggtattagccgaagtggccgccgttaatgcagccaatactgacgttgcaactgag
ccacaagctgagacgaaagcacctcgctcacgtcgccagccacgcaaagatgccgctgtt
gccaatgagacagtagaagcgactgacgcagcaagccaagtggaagcaaacgctgaagtt
agcgctgaaaagccagtggttgaaaaccgtgctgaggccccagctgacgtaactgaagtg
aagaccgaagccgagaccgatgcggataacgcagaactcagtgccgatgcggatgataaa
gcgaaacgcgaatctcgcgatggacaacgtcgtagtcgccgtagcccacgtcatttaaga
gcggccggtcaacgtcgtcgccgtgatgaagatgagcaaggcgtctctgcacctgcacaa
ttcgtaccaaacgatgcactcggtgatgctcaagactaccctgcgccaaccgctcaaact
gcagaagcagctgagaccacagaagcaaaagcaactgaagttgccgctgaaccgactgtc
acttctcctgcagctgtagtcgaaacggcagatgtcagtgtggttgctgaaaccaataaa
gctgttgagactgaagttgttgagtcagtagctaccgagcaagtggccaagcttaaagct
gaagttgcagtaacagaagctcctgctgacactgcggtaaataacaagccagagacgagc
gttaaggctgaagacgttgctgttgagccagctaaagcggtagaagcggttacagaagcc
attgtgaccccagctgaaactccagttgctcaagcgaaaacagaaactgtcgcagttgaa
gctgtcgcgcccgaagtggaaaaagccgaagtgaaagatgccgtgaaatcagtggcctca
gctccaatggcaaaacctgcgccaatcgttaaaccacaggcgaaacccgttgtgactcaa
gctgtcgcagcccctgcagctgaaaccgtggtgagcaaacccaaagccgctagccgtttt
ggttcaatggtgtcatcagagatgaccaagccgacggtagaagtcagaacacaggtagaa
gtgccaaaaggccgcgagtatgacaatactgcctcagccgaagtcactgcgcctaagctg
aagcaaagcaatagcgccgaatcggatatggctcgtccataa
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