Shewanella sp. MR-4: Shewmr4_2449
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Entry
Shewmr4_2449 CDS
T00388
Name
(GenBank) SMC domain protein
KO
K03546
DNA repair protein SbcC/Rad50
Organism
she
Shewanella sp. MR-4
Brite
KEGG Orthology (KO) [BR:
she00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
she03400
]
Shewmr4_2449
DNA repair and recombination proteins [BR:
she03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Shewmr4_2449
Archaeal homologous recombinant proteins
Shewmr4_2449
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
cobW
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
ABI39520
LinkDB
All DBs
Position
complement(2911937..2914993)
Genome browser
AA seq
1018 aa
AA seq
DB search
MKPLSLSMSAFGPFASTQTIDFTELGNNPLFLINGPTGAGKTTLLDGICFALYGKTTGNE
REGSQMRCDMADDSVLTEVTFHFQLGSTGYRIRRVPEQERLKKSGDGSTVQKSEAQLYKI
APDGSETLIVASKVSDATAEIEALTGLDVEQFRQVMVLPQGKFRELLMADSKAREQIFSQ
LFQTHIYKRIEDTLKAKAADIRNLVKEQRARRDGILQTAALTSDDELTAELSRIEPEFAA
ATAAKEQSVAAHLAALKQRDSAQQLFAEFTRLQELQAEALSLNEQQAQIATQTTRLEVAK
QALRVKPLLDNALSREQEASVAAAQRDSAQLTLDAAKLALSHAETAAQEIIPLEHKLREV
EQQNSHLSALVPQLAEFASLEQALAQAKEILQHTKLQGQESKTALATLVEQRGHCENQLP
ALQSQSEQQLATAQALQQHRHMLEQFKQWQQICAKVAHTQGVLEQVGLQGKALNTQYQAA
STAYKSLQLKWFQGQAAILARELKPHEPCPVCGSSTHPQPAVSHEDLPTDLQLQAAQDAE
ALALDNLNKARAEYRGLQKQLEAQQQQANDLATALGDKVELSLESHSQTLERLMQQAKQA
DDAAQALQLLQQQIKTLQQQESTLAQQLELERERYREQEGKVERLSGQLAEKALRIPEEY
RTLDVLNQAIANNQQQLEQIKRQIDVLRTAQQQATQQSVAAQTALSAAIERCHATVELQA
QAQQTLQTALDNAGFIDRDALREALLTDEQMQTLAEGKETYHRQCALNQSQLTQLTTKLS
ESTSPDLDALEALLTERLAQLKNAEELWSQLNTRLTLLNNTQTQLAVVDQKAKSLEDEYA
VIGTLADVANGNTGNKISLQRFVLSVLLDDVLLAATQRLHLMSKGRYRLLRKEDRAKGNK
ASGLELEVEDAYTSKVRPVATLSGGESFMAALSMALGLSDVVQAYAGGIKLDTLFIDEGF
GSLDQDSLELAIRTLMDLQSAGRMIGVISHVSEMKEQIGTRIDILKTSHGSEIKVILP
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgaagccactctcgctgtcgatgtcggcctttggtccttttgcttcgactcaaaccatt
gattttaccgaactggggaataaccccttattcctgatcaacgggccaacaggcgcgggc
aaaaccacgctgctcgacggaatttgttttgcgctctatggaaaaaccacgggtaacgag
cgtgaaggcagccagatgcgctgcgatatggccgatgatagcgtactgactgaggtgacc
tttcattttcaattaggtagtacgggttatcgtattcgccgcgtccccgagcaggaaaga
ttaaagaaaagcggtgatggctcaacggtacaaaagagtgaggcgcagctgtataagatt
gccccggatggcagtgaaacccttatcgtcgccagtaaagtgtcagacgccacggccgaa
attgaggcattaaccggcctagatgtggagcagttccgccaagtgatggtgcttccgcag
gggaaatttcgcgaattgctgatggccgactctaaggcgcgtgagcagatttttagccaa
ttattccaaacccatatctataagcgcatcgaagatactctaaaggctaaggcggcggat
attcgcaatcttgtcaaagagcagcgcgcccgccgtgacggtattttgcaaacggcagca
ctcacatccgatgatgaacttactgcagagttgagtcgcattgaacccgaattcgcggcg
gcgacggcagcaaaagagcagagcgttgcggcgcatttggcggcattaaaacagcgtgat
agcgcgcagcaactctttgctgaatttactcgcttacaggaattgcaggctgaggcgctt
agccttaatgagcagcaagcgcaaattgcaacccaaacgacacggcttgaggtggccaag
caagcactgcgggtaaaacccttattagataatgccttgtcgcgggagcaagaagcgagt
gttgcagccgctcagcgcgatagcgcacagttgacgctcgatgccgctaagctcgcactc
tctcatgctgaaactgcggcgcaggaaattatcccccttgaacataagctgcgtgaggtt
gagcagcaaaatagtcatctcagtgcgttagtgccgcagctggcagagtttgccagcctg
gaacaagctttagcgcaggcaaaagagatactgcaacacaccaaattgcaggggcaggag
agtaaaactgcacttgccaccttagttgaacagcgcggtcattgtgagaatcaactgcca
gccttgcaatcgcaaagtgagcagcaacttgccactgcgcaggcgctgcagcagcaccgt
catatgctcgagcagttcaagcagtggcagcagatctgtgccaaagttgcgcatactcaa
ggggttcttgagcaggtcggtttacaaggaaaagcgcttaatacccaatatcaagcagct
tcaacggcttacaagtctttgcaactgaaatggtttcaaggtcaggcagccattttagct
agagagttaaaaccccatgagccatgcccggtttgtggcagttcgacccatcctcagccc
gcggtgagtcatgaggatttaccaacggatctacaattgcaggcggcgcaggatgccgag
gccttggcgctcgataatctcaataaagcgcgggcagaatatcgtgggctgcaaaagcaa
ttagaagcacagcaacagcaggcgaatgatctggcaacagcccttggtgataaggttgag
ttgtcactcgaatcccatagccaaaccttagaaaggctcatgcagcaagcgaagcaagcc
gatgatgcggcgcaagcgctgcagctgttacagcaacagatcaaaaccttgcagcagcaa
gagtcgactttggcgcagcaactcgaacttgagcgtgagcgttaccgtgagcaagaaggc
aaagtcgagcggctatcgggtcaacttgcggaaaaagcgctgaggatcccagaagaatac
cgaacactggatgtattgaatcaagcgattgcgaataaccagcaacaacttgaacagata
aaacgtcagattgatgtattgagaaccgcgcagcagcaggcaacgcagcagagtgtggcg
gcgcaaacggcattatcggcggcgatagagcgttgtcatgctacggtagagctgcaggcg
caagcacagcagacacttcagacggcgctcgataacgcgggctttattgatagggatgca
ttgcgcgaagccttgttaaccgatgagcaaatgcagacgctggccgagggtaaagaaacc
taccacagacagtgcgccttaaatcagtcgcaactgactcagcttacaaccaagttgagc
gagtcgacatcacccgatcttgacgccttagaggccttgctcactgagcgactcgcgcag
cttaaaaatgcggaagagctatggagtcaactgaatactcggctcaccctgcttaacaat
acccaaactcagctggcggtggtcgatcaaaaggccaaatccctcgaggatgaatacgct
gtgattggcaccttggccgatgttgccaatggtaatacgggcaacaaaatttccctgcaa
cgctttgtgcttagcgtattgctcgacgatgtgttgcttgcggcaacgcagaggctgcat
ttaatgagtaaagggcgctaccgattattgcgcaaagaggacagggcgaagggcaataag
gcctcagggctagagcttgaagtcgaggatgcctacacctctaaagtgcgtcccgtggcg
accttaagtggcggtgagagttttatggcagccttgtcgatggctttgggcttatcggat
gtggttcaagcctacgcaggggggataaaactcgataccttatttatcgacgaaggcttt
ggcagcctagatcaggactccctcgaacttgccattcgcacgctgatggatttgcagtcg
gcggggaggatgattggggtgatttcccatgtatccgaaatgaaagaacagataggcact
cgaattgatatcttgaaaacctcccatgggagtgaaatcaaggtgattttgccttag
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