Shewanella sp. MR-4: Shewmr4_2516
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Entry
Shewmr4_2516 CDS
T00388
Name
(GenBank) transcriptional regulator, CdaR family
KO
K02647
carbohydrate diacid regulator
Organism
she
Shewanella sp. MR-4
Brite
KEGG Orthology (KO) [BR:
she00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
she03000
]
Shewmr4_2516
Transcription factors [BR:
she03000
]
Prokaryotic type
Helix-turn-helix
Other families
Shewmr4_2516
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Diacid_rec
HTH_30
GGDEF_2
HTH_8
Calci_bind_CcbP
GAF_2
GAF
Motif
Other DBs
NCBI-ProteinID:
ABI39587
LinkDB
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Position
2995206..2996438
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AA seq
410 aa
AA seq
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MYVLDQHIAKQIVSRTMKIIGHNINVMNGQGVILGSGDPKRIGSTHEGALLAIAQNRNVE
LSEEVASGLHGVKPGINLPLHYQGQIIGVIGITGDPAELTHYGELLKMTAEMIVEQANQQ
DQLQWENRQREEFILQLIKAQTDDDEQLHRWAKQLDIDINLPRVAAIIEVSEKQSTPTQQ
KSAAFTSLAQSEQSADERNPRVSEILKQVLHLLQNPDRGNLIAMTSMSQLVILKPAFLDG
KQWDPELENQRIDKLLQRLPAQMDLNFKIALGHFFPEKGGIARSYQTAQETLNLGKQLNP
EGTKYLFEDYSLQVLLSGLKHDWRGQALASPYQQLAKADKNGQLRKTLAAYITHFGDAQQ
CANALFIHRNTLRYRLDKIQQLTKSDIHSLHGLLSLYLGQLIDTSNYRLE
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgtacgttttggatcaacacatcgctaaacaaattgtgagtcgcaccatgaaaatcatt
gggcacaatatcaatgtgatgaatggtcagggcgtgatcttaggttccggcgatcccaaa
cgtattggctcgacccacgagggtgcgctgctcgctatcgcccaaaaccgcaatgtggaa
ctgagtgaagaagtggcctctggtttacatggtgtcaaacccggcatcaacttacccttg
cattatcaagggcaaattattggtgtgattggtattactggcgatccagccgagttaacc
cactacggtgagctgctaaaaatgaccgccgaaatgattgtcgaacaagccaaccagcag
gatcagctgcagtgggaaaatcgtcagcgtgaagaatttattttgcagttgattaaggcg
caaaccgatgacgatgagcaattgcatcgctgggccaagcaactcgacatcgatatcaat
ttgccgcgagtggccgccataattgaagtcagtgaaaaacaatccacgccaacccagcaa
aaatccgctgcgtttacttcattagctcagagcgagcaaagcgcggacgagcgtaatccc
agagtcagcgaaatcctcaagcaagtgctgcatttactgcaaaatcccgatcgcggcaac
ttaattgccatgacctcgatgtcgcaactggtgatcttaaaaccggcctttttggatggt
aaacagtgggatcctgagcttgaaaaccagcgtatcgataaactgctgcagcgtttaccg
gcgcagatggatttaaattttaaaatcgctcttggacattttttccctgaaaaaggcggc
attgcacgctcctaccaaaccgcgcaggaaaccttgaacttaggcaagcagcttaacccc
gagggcactaaatacctgtttgaagactactccttgcaagtgctgttatctgggctcaag
catgattggcgtggtcaagcgctggccagcccctaccaacaattagccaaggccgataaa
aatggtcagctacgcaaaaccctagccgcctatatcactcactttggtgatgcacagcaa
tgcgccaatgcgctgtttattcaccgaaataccctaagatatcggttagataaaattcag
caactcaccaagagtgacatccattccctccacggattgttaagcctttatcttggccag
ttgatagatacctcaaattaccgactcgagtag
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