Shewanella sp. MR-4: Shewmr4_2626
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Entry
Shewmr4_2626 CDS
T00388
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
she
Shewanella sp. MR-4
Pathway
she03030
DNA replication
she03430
Mismatch repair
she03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
she00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Shewmr4_2626
03430 Mismatch repair
Shewmr4_2626
03440 Homologous recombination
Shewmr4_2626
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
she03032
]
Shewmr4_2626
03400 DNA repair and recombination proteins [BR:
she03400
]
Shewmr4_2626
Enzymes [BR:
she01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Shewmr4_2626
DNA replication proteins [BR:
she03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Shewmr4_2626
DNA repair and recombination proteins [BR:
she03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Shewmr4_2626
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
DUF655
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
ABI39697
LinkDB
All DBs
Position
complement(3128142..3131618)
Genome browser
AA seq
1158 aa
AA seq
DB search
MSDPRFVHLRVHSDFSMSDGVAKVKPILAQVEAKGMAAVALTDQNNLCGLVKFYGGCHGA
GIKPIIGADFWMQVPGFDDEFCALTIIAMNNDGYQNLTQIISQAYLRGHVAGRVVIDQEW
LVTYNEGILLLSGGKEGDVGKALLKGNNTQVESLCEFYQQHFEGRYYLELLRTGRTDEER
YLHMAVGLAQEKGIPVVATNQVVFLKPEDFEAHEIRVAIHDGFTLADPRRPKKYSEQQYL
RSEEEMCELFADIPAALENTVEIAKRCNVTIRLYEYFLPNFPTGDMSIEDYLVDCSKKGL
EERLEFLFPDPQVRAERRGEYDERLDVELKVINQMGFPGYFLIVMEFIQWGKDNGIPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE
LYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPEPGMTLAKAFEVEPA
LQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDAEGKNPVTQ
FDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRPPVRIEAIPLDDPASFRLL
QRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGREE
VSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRGTFKEGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPS
QFMAAVMSADMDNTDKIVTLVDECERMGLTIIPPDVNKGLFKFTVDDDLRIVYGIGAIKG
VGEGPVESILEARKDGPFKDLFDFCARIDLKKLNKRVIEKLICAGALDALGPHRASMMAT
LPEAISAADQHAKAEAIGQHDMFGLLNSDPEDSKQQFVECTPWPDKIWLEGERETLGLYL
TGHPINQYLKELKHYTSGRLKDVHPTDRGKTVKAAGLVVATRVMLTKRGSKMGLLTLDDK
SARLEVMLFTEAFEKFNYLLEKDRILICEGEVSFDDFAGGNRMTARNIIDISEARSHFAS
ALEIDLDASQLNPSVLESIEQSISPWRNGAVPVVINYSQAQAKGQFRLAEHWRVNPSDEL
VFALESLLGPNKVRILFP
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatcctcgttttgtgcatcttcgtgtccacagtgacttctctatgtccgatggt
gtggctaaggtcaaacccatcctcgcccaagttgaggctaagggtatggctgcggtggcc
ttaacggatcaaaacaacctctgcggtctggtcaagttttatggtggttgccatggtgcg
gggattaagccgattattggcgcggacttttggatgcaagtgccggggtttgatgacgag
ttttgtgccttaaccattattgcgatgaataatgatggctatcaaaatctcacccaaatc
atcagccaagcctatctacggggccatgtggctgggcgggtggtgattgaccaagagtgg
cttgtcacctacaacgaaggcattttattgctgtctggtgggaaagaaggggacgtgggt
aaggcgctgcttaagggcaacaatactcaagtcgagtccttatgcgagttttatcagcaa
cattttgaagggcgttattacctcgaattattgcgcacggggcgcaccgatgaggaacgt
tacctgcatatggcggtggggctcgcgcaggaaaagggcattcccgtggtcgccaccaat
caggtggtatttttaaaacccgaagacttcgaggcccatgagatccgcgttgcgattcac
gatggttttacgcttgccgatccccgtcgtcctaaaaaatacagtgagcagcaatatctt
cgcagcgaagaggaaatgtgcgagctatttgccgacattcccgccgcgctcgaaaatacc
gttgaaattgccaaacgctgcaacgttaccattcgcttatacgaatacttcttaccgaac
ttccccactggcgatatgtcgattgaggattatctggttgattgctctaagaaggggctc
gaagaacgcttagagttcttattccccgatccacaagtgcgcgccgagcgccgcggcgaa
tatgacgagcgtctcgatgtggagctaaaagttatcaaccagatgggcttccccggttac
ttccttatcgtgatggagtttattcagtggggtaaggataacggcattcccgttggtccc
ggtcgtggttcgggcgcgggttcccttgtggcctatgcccttaagattaccgacttagac
cccttagaattcgacctgctgttcgaacgattcctcaacccagagcgggtatctatgccc
gacttcgacgtcgacttctgtatggataggcgtgatgaggtcattgaccacgtggccgag
ctctacggccgtgaggcggtatcgcagatcattaccttcggtaccatggcggccaaggcg
gttatccgcgacgtgggtcgtgtgctcggccatccctatggctttgtggaccgcatttct
aagcttattccgccagagccaggcatgacactcgccaaggcctttgaagtggagcctgcg
ctgcaggagtcctacgatgccgatgaggatgtgaaagatcttatcgacatgtgccgtaaa
ctcgagggggtgacccgtaacgccggtaagcatgcagggggcgtggttattgcgcccacc
aagatcaccgacttctcgccgctttactgcgacgccgaaggtaaaaacccggtaacccag
tttgataagaacgacgtggaaaccgccggcttagtcaaattcgacttcttagggttaaga
accctgaccatcgtcgactgggcgctggagatgatcaacaaggtggaggttaaaaatggc
cgtccaccggtgcggattgaggcgattcccctagacgacccagcttcgttccgcttgctg
caacgctacgaaaccaccgcggtattccagctcgaatctcgtggtatgaaggatttgatt
aagcgtctgcaacctgactgcttcgaagatatgatcgcactcgtggcactgttccgcccg
gggcctctgcaatcgggcatggtggataactttatcgagcgtaagcatggtcgtgaagag
gtgtcttaccctgattctcaataccagcatgaatccttgaaggagctgttgtcgcccacc
tacggcattattttgtaccaagagcaggtgatgcagattgcgcaggtgctatcgggttat
accttaggtggcgcggacatgctgcgccgcgctatgggtaagaaaaagcctgaggagatg
gccaaacagcgcggtacctttaaagaaggggcgattaagaacggcgtcgacggcgagttg
gcgatgaagatcttcgacttagtggaaaagtttgcgggctacggctttaacaaatcccac
tccgctgcgtacgcgctcgtgtcctatcaaaccctgtggctcaagactcacttcccgtcg
cagtttatggcggcggtaatgtctgccgatatggacaacacagacaaaatcgtcacccta
gtggatgaatgtgagcgcatgggactcaccattattccgccggatgtgaacaaaggtctg
tttaagtttaccgtcgatgacgatctacgcatcgtttacggcatcggtgccatcaaaggt
gtgggtgaggggccggttgagtccattcttgaggcgcgtaaggacggcccctttaaagat
ttattcgacttttgcgcccgtatcgatcttaaaaaactcaacaagcgggtgattgaaaag
cttatctgtgctggcgccttagatgcacttgggccgcaccgcgcctctatgatggccacc
ttgcccgaggcgataagcgccgccgatcagcatgctaaggccgaggccatcggccagcat
gatatgtttggtctgctcaatagcgaccctgaggacagtaagcaacagtttgtcgaatgc
actccgtggcccgataaaatttggctcgaaggggagcgcgagaccttaggtctatattta
accggtcacccgattaatcaatatcttaaagagcttaagcattacacctctgggcgctta
aaggacgtgcatccaaccgatcgcggcaaaaccgtgaaggcggcaggccttgtggttgca
acccgggtgatgctcactaaacgtggctcgaaaatgggcctgttgacgctagatgacaag
agtgcgcgcctcgaggtgatgctctttaccgaagcctttgagaagtttaactatctgctc
gagaaggacaggatcctgatctgcgaaggtgaagtcagcttcgatgattttgccggtggc
aaccgcatgacggcgcgcaatattatcgatatcagcgaggcgcgcagccactttgccagc
gccttagaaatcgatttagacgcatcgcagttaaatccaagcgtgctcgaaagtatcgag
caatcgataagcccgtggcgcaacggtgccgtgcccgtggtgattaactacagtcaagcg
caggccaagggccaatttaggttggcggaacattggcgagtcaaccccagcgatgaattg
gtgtttgcccttgagagcctcttggggccaaataaggtgcggatcttgttcccctaa
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