Shewanella sp. MR-4: Shewmr4_2753
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Entry
Shewmr4_2753 CDS
T00388
Name
(GenBank) diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
Organism
she
Shewanella sp. MR-4
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_3
5TM-5TMR_LYT
PAS
PAS_9
PAS_8
PAS_4
PAS_11
PAS_7
Cas10-Cmr2_palm2
Motif
Other DBs
NCBI-ProteinID:
ABI39824
LinkDB
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Position
complement(3288201..3291230)
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AA seq
1009 aa
AA seq
DB search
MDKSIFLPLVQNAALLLALVFLYDAIPKKHQRQYFLLWRLGIGLLIGGIGVTIMSTPWMY
EPGIIFDTRSVLLCVTGLFFGGLPTVVAVIITGAYRYSIGGAAMWVGLAVIISSGLIGVI
WRQYRKSYLANISGREIFSFAFVVHIVMLLWFFLLPSHVAIPVLQKIMLPVLTIYPLATW
LLSRLLSRRFELERDEQIRLQDDFLFRSQFNVGNIGIAITGVDQKWIKVNPRLCQMLKYS
EDELLHMTWKQLTHPDDIEADIVKFELMLAGKIDNYEMDKRFIAKDSAIVYTHMTVACKR
ANHQVLLVIAGYLDVTAQTLADREVLASREQLELVLSSSDLGVWDWDIRNDHIERNARSA
DILGCDIDMLNANSRQWMDSIVPEDRPKVLHSIEAHIRGETPQHKMEYRLKTLNRDIRWI
LDTGKVVSRDTNNNALRMCGTYTDITEAKLIEESLKLSALVYDNSSEAMSVLDETGVIIT
VNAAFTEITGYSESEIRGQHIRMLYCDLNGHGFYTEMNNEIREKGEWQGEMRQRRKNNEE
YVIWLTINTINDKDGQPYRRVALFSDITDKKQSEHLIWKQANYDTLTGLPNRRMLLEYLG
AEIRSADRNRNHFALMFLDLDYFKEVNDTLGHAMGDLLLIETANRLKSCVRDADVVARLG
GDEFTVVLSAMADHKGIERVAEHILRRISEPYVLGEETAYISASIGITLYPDDATSIEGL
LKHADQAMYAAKDQGRNRFNYFTPSMQEYAKYRMRLIQDLRQAVVNKEFELHYQPIVTMG
TGEVLKAEALLRWFHPERGQVSPAEFIPVAEDTGLIVEIGNWVFEQAARQSAQWRKTLGV
EIQISVNKSPIQFRDEGTLLHNWLELLQELDVTGTGVCVEITEGLLLDASMGVTEKLLAY
RDAGVQVSLDDFGTGYSSLAYLKKFDIDYLKIDQSFTRHIDTDESDQTLCEAIIVMAHKL
GMKVIAEGVETEAQRQVLLNAGCDYGQGYLFSKPVSAAEFTSQYLLKEA
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atggataaaagcatttttttacccttagtacaaaatgcggcgttattgctcgctctcgtg
tttttatacgatgcgattcctaaaaagcatcagcggcagtattttctgctgtggcggctg
ggaataggattactcataggtggcataggcgtcacgattatgagtaccccatggatgtac
gagcccggcattatcttcgacactcgctctgtgctcttatgtgttaccggcctctttttt
ggtggtttgcccactgtggtggcggtgattatcacaggggcttatcgatacagcattggt
ggcgccgccatgtgggttggtctggctgtgatcatctcctcaggcttgattggggtgata
tggcgccaataccgtaagtcctatcttgccaatatttcgggcagagaaatcttcagtttt
gcctttgtggtgcacatagtgatgttgctgtggtttttcctgctgccgagccatgttgcc
atccccgtgctgcaaaaaattatgttgcccgtgttaaccatttacccccttgcaacttgg
ctacttagccgtttgctctcccgccgttttgaacttgagcgtgacgagcagatccgttta
caggatgattttttgttccgcagccaatttaatgttggcaacattgggattgccattact
ggcgtcgaccaaaagtggatcaaggtaaatccaaggctgtgccaaatgctgaagtactca
gaggatgagttgctgcatatgacctggaaacagctcacccatcccgatgatatagaggcc
gatatcgtcaaatttgaacttatgcttgcgggtaaaattgataactatgagatggataaa
cgctttatcgccaaggatagcgccattgtttatacccatatgacggtggcctgtaagcgc
gcgaaccatcaggtgttattggtgattgcgggctacttggatgtcacggcgcaaacccta
gccgatagggaagtgctcgccagccgtgaacaacttgagctggtattgagcagtagtgat
ctgggggtatgggactgggatatccgcaatgatcatatcgagcgtaacgcccgaagcgcc
gatattttaggttgtgacatcgatatgcttaacgccaatagtcgccaatggatggactcg
attgtgcccgaggacaggcccaaggtgctgcactctatcgaagcccatattcgcggggaa
acgccgcaacataagatggaatatcggttaaaaaccctcaaccgtgatattcgttggatt
ttagataccggcaaagtcgtgagtcgcgataccaataacaatgccttgagaatgtgcggt
acctataccgatattaccgaagctaagctgattgaagaatccttaaagctctcagcattg
gtctatgacaacagttctgaagccatgagtgtgcttgatgaaacgggcgttattatcaca
gtcaacgccgcctttaccgagatcactggttatagtgaatcggaaattcgcggccagcat
attcgcatgctttattgcgatctcaacggccatggtttttataccgagatgaataatgaa
atccgcgaaaaaggcgagtggcagggggaaatgcgccaacgacgtaagaacaatgaagag
tacgttatttggctgaccatcaacaccattaacgataaagatggccaaccctatcgccgc
gtggcgctgttttccgatatcacagataaaaagcagagtgagcatctgatttggaagcag
gctaactatgacacgctcactggtttaccgaatcggcggatgctgctcgaatatttgggg
gcggaaatcaggagcgccgaccgcaatcgtaatcattttgccttgatgttcctcgatttg
gattactttaaagaggtgaatgacaccctaggccacgccatgggggacctgttgctgata
gaaaccgccaatcgcttaaagtcctgtgtgcgggatgccgatgtggtggcgcggctcggc
ggcgatgaatttaccgtagtgctcagcgctatggcggatcataagggtattgagcgggta
gctgagcacattttaaggcgcatttccgagccctatgtgctgggtgaggagaccgcctat
atcagcgccagtatcgggataactctgtatcccgatgatgcaaccagcattgaaggtttg
ctcaaacatgcggatcaggccatgtatgcggctaaagatcaggggcgtaatcgtttcaac
tacttcacgccttcgatgcaggaatatgcaaagtatcggatgcgcttaatccaagattta
cgccaagccgttgttaacaaagagtttgagttgcattatcaacctatagtgactatgggg
actggtgaggtccttaaggccgaagcgcttttacgttggttccaccccgaacgtgggcag
gtttctccagctgagtttatacccgttgccgaagatactgggctgattgtcgagattggc
aattgggttttcgagcaggcggcgcgccagagcgcacaatggcgtaaaacccttggggtc
gagatccagatcagcgttaacaagtcgcctattcagtttcgcgatgagggcacgctgctg
cacaattggctggagttactgcaggaattggatgtgacaggcacaggcgtgtgcgtcgaa
attaccgaaggactcttactcgatgccagtatgggcgtgaccgaaaagcttcttgcctat
cgggatgcgggcgtacaagtttctctagacgactttggcactggctattcatcactggcg
tatttgaaaaaattcgatatcgactatttgaaaatcgatcaatcttttacccgtcatatc
gacacggatgaaagcgaccaaaccctgtgtgaggcgattatcgttatggcccataagtta
ggaatgaaagtgattgccgaaggggttgaaaccgaggcgcagcgccaagtgttgcttaat
gcgggctgtgactatggccaaggctatttattctctaaacctgtgagtgcggctgagttt
acaagccagtatttgctcaaagaggcttag
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