Shewanella sp. MR-4: Shewmr4_2809
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Entry
Shewmr4_2809 CDS
T00388
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
she
Shewanella sp. MR-4
Pathway
she03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
she00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Shewmr4_2809
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
she03019
]
Shewmr4_2809
Enzymes [BR:
she01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Shewmr4_2809
Messenger RNA biogenesis [BR:
she03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Shewmr4_2809
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UvrD-helicase
P-loop_SecA
AAA_19
UTP25_NTPase-like
AAA_22
AroM
Gag_p24
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ABI39880
LinkDB
All DBs
Position
3363156..3364457
Genome browser
AA seq
433 aa
AA seq
DB search
MRFESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL
QKMAENPSETLKSNARVLILTPTRELAAQVADNVEAYSKYLNFSVLTIYGGVKVETQAQK
LKRGADIIVATPGRLLEHLTACNLSLSSIDFLVLDEADRMLDMGFNADIQKILQAVNKKR
QNLLFSATFSSAVKKLANEMMVKPQVISADKQNTTADTVSQVVYPVEQRRKRELLSELIG
KKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFMSGKVRVLVA
TEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLADIE
KLIGQKIRRITVPGYEVGSRDLLLKQLQTRRSFAKKQQRLDNVSEQIVAEKSMQGRRVKM
KVGQAPSKAKKLK
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgagatttgaatcttttagtttttgccccgagattttacgcgctatctcagattgcggt
tatcaaaaaatgacacctattcagcagcaagcgatccccgccatccgccgcgggcaagat
gtgctcgccagcgcgcaaacgggcactggtaaaacggcggcattcgcattacctatactg
caaaagatggcagaaaatcccagcgagaccttaaaatcgaacgcgcgggtattaatctta
acgccgactcgcgagctcgcagctcaagttgccgacaacgttgaagcctacagcaagtat
ttaaatttcagcgtgttaaccatttacggcggtgtaaaggttgagactcaggcgcaaaaa
cttaaacgcggtgccgatattattgtcgcgacgccagggcgtttgctcgagcaccttacc
gcctgtaatttaagtctctctagcatcgactttttagtgctcgatgaagccgaccgtatg
ttagacatgggctttaatgcggatattcaaaaaatcctccaagcggtgaataagaagcgt
caaaacctattgttctcggccaccttctccagcgcggtgaaaaaactggccaacgagatg
atggtcaagcctcaagtcatcagcgccgataagcaaaacaccaccgcagataccgtgagc
caagtggtgtatccggttgagcagcgccgtaagcgcgaactcttatccgaactgattggt
aagaagaactggcaacaagtgttggtctttaccgcgacgcgtgatgcggccgacacctta
gtgaaagaattgaatttagacggcattccgtctgaagtggtgcacggagagaaggcgcaa
ggtagccgtcgccgcgcactgcgtgagtttatgtcgggtaaggtacgcgtcttagtcgcg
accgaagtcgccgcccgcggcttagatattcccagccttgagtatgtggtcaacttcgac
ttacccttcctcgccgaagactatgtacaccgtattggccgtaccggtcgcgcgggtaaa
tctggggtcgcgatttcatttgtgagccgtgaagaagagcgcaccttagcggatattgaa
aagcttatcggccaaaaaattcgtcgtattaccgttcccggatacgaagttggtagccgc
gacttgctgttaaagcagctacaaacccgtcgcagttttgccaagaaacaacagcgactc
gacaacgtcagcgagcagattgtcgccgagaaaagcatgcagggccgccgcgtgaaaatg
aaagttggccaagccccaagcaaggcgaaaaagctgaaataa
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