Shewanella sp. MR-4: Shewmr4_2848
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Entry
Shewmr4_2848 CDS
T00388
Name
(GenBank) RNAse III
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
she
Shewanella sp. MR-4
Pathway
she03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
she00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
Shewmr4_2848
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
she03019
]
Shewmr4_2848
03009 Ribosome biogenesis [BR:
she03009
]
Shewmr4_2848
03036 Chromosome and associated proteins [BR:
she03036
]
Shewmr4_2848
Enzymes [BR:
she01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
Shewmr4_2848
Messenger RNA biogenesis [BR:
she03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Shewmr4_2848
Ribosome biogenesis [BR:
she03009
]
Eukaryotic type
90S particles
RNase
Shewmr4_2848
Prokaryotic type
rRNA processing factors
Shewmr4_2848
Chromosome and associated proteins [BR:
she03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
Shewmr4_2848
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
RM44_endonuclase
DND1_DSRM
DSRM_2
Motif
Other DBs
NCBI-ProteinID:
ABI39919
UniProt:
Q0HG98
LinkDB
All DBs
Position
complement(3401334..3402014)
Genome browser
AA seq
226 aa
AA seq
DB search
MEPIKNLPRLCRTLGYEFKNIELLTQALTHRSAANKHNERLEFLGDSILSIVISDALYHQ
FPKATEGDLSRMRATLVRGDTLTLIAKAFKLGDYLFLGPGELKSGGFRRESILADAVEAI
IGAIYLDSDLEVCRKLLLHWYAERLAEIQPGVNQKDAKTLLQEYLQGLKKPLPDYQVINI
EGDAHDQTFTVECRIDDLSESVIGVASSRRKAEQIAAAQVLELLKK
NT seq
681 nt
NT seq
+upstream
nt +downstream
nt
atggaaccgattaaaaatttgccacgtttgtgtcgtactttgggttatgagttcaagaat
attgagcttcttacccaagcgttgacccacagaagtgcggcaaataagcacaacgagcgt
ttagagtttttaggcgattcgattttatctattgtgatttcagacgccttataccatcag
tttcctaaggcgactgagggtgatttgagccggatgcgcgccaccttagtgcgtggtgat
acgctcaccttgattgctaaggcctttaagcttggggattatttattcttaggccctggt
gagttaaaaagcggtggttttagacgtgagtctatcttggccgatgcggtcgaggcgatt
atcggcgcaatctacttagattccgatctcgaagtgtgccgtaaattgttactgcattgg
tacgccgagcgtttggccgagatccaacccggcgtgaatcaaaaagacgctaaaacctta
ctgcaagaatatttacaagggttaaagaagccgctacccgattaccaagtaatcaatata
gaaggcgatgcccacgatcaaacattcactgttgaatgtcgtatagatgacttgagcgaa
agcgtgattggcgtagcgagttcgcgccgtaaagccgagcagattgccgcggctcaagta
ttggagttactgaagaaatga
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