Shewanella sp. MR-4: Shewmr4_3264
Help
Entry
Shewmr4_3264 CDS
T00388
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
she
Shewanella sp. MR-4
Pathway
she03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
she00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Shewmr4_3264
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
she03019
]
Shewmr4_3264
03016 Transfer RNA biogenesis [BR:
she03016
]
Shewmr4_3264
Enzymes [BR:
she01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Shewmr4_3264
Messenger RNA biogenesis [BR:
she03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Shewmr4_3264
Transfer RNA biogenesis [BR:
she03016
]
Prokaryotic type
tRNA degradation factors
Shewmr4_3264
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
TFIIE_beta
OB_RNR_1st
Motif
Other DBs
NCBI-ProteinID:
ABI40332
LinkDB
All DBs
Position
complement(3895380..3897806)
Genome browser
AA seq
808 aa
AA seq
DB search
MIKDPHFEREQDKYENPIPSREYIIEYLRSQKSPITRDSIAAALQIHDEEQLEALRRRLR
AMERDGELVFTRGQSYGLPEKMDLISGTVLGHREGFGFFKPDEGGDDLFISNRDMLMYFH
GDKVLAQKAGMDRKGRREARIVRLIQPRSAAIVGRFHVDSGMAFVIADDKRITQEILIAS
EDRNGARQGDVVVVELTRRPGRFVKAAGKVTEVLGKQMAPGMEIEIALRNYDLPHTWSAA
IEKKLRRIPDEVTEADKVGRVDLRNLPLVTIDGEDARDFDDAVYAEAKPSGGWRLWVAIA
DVSYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSLNPDVDRLCMVAEMTIS
ARGKLSGYKFYPAVMHSHARFTYTQVAAMLEGGPIAPEHEALFPHLQCLQSLYLALDEQR
AERGAIAFETLETQFIFNDQRKIDKIVPRARNQAHKIIEECMILANVSAAKFVKKHKGEI
LYRVHESPSEQKLANFKEFLAERGLSMGGGLEPTPADYQNVMLQIADRPDAELIQVMLLR
SMRQAIYTPDNEGHFGLALEEYAHFTSPIRRYPDLVLHRVIRYLLAKEKGEANEKWTPDG
GYHYQLDELDQLGEECSTTERRADEATRDVSDWLKCEFMQDHVGDTFEAVIASVTNFGLF
VRLNDLFIDGLVHISSLGSDYYQFDPMRQRLIGEHTGQVYQVGDPVTVKVAAVNLDDRQI
DLMMLGDSGKGGRRKAAPSRDKPMTARERVNREGAKMAKAAKSTGTKAKAGSDKAGSKSK
SKAGTKPKKSVKDSAKKPKAAKRSTRKK
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaagaccctcatttcgagcgtgaacaggataagtacgaaaaccctatcccaagt
cgtgagtatattatcgagtacttacgttctcaaaaatcacctattacccgtgacagcatc
gctgccgcactacagatccacgatgaagaacagttagaagccctgcgtcgccgtttacgg
gcgatggagcgtgacggtgaactggtatttacccgcggtcaaagctatggcttacctgaa
aaaatggatctgatttctggcacagtccttgggcacagagaaggcttcggcttctttaag
cctgacgaaggtggcgacgatttatttatctccaatcgcgatatgctgatgtattttcat
ggtgataaagtgctggcacaaaaagctggtatggatcgcaaaggccgccgcgaggcccgt
attgtgcgtttgatccaaccgcgtagtgccgccattgtcggacgattccatgtcgatagc
ggcatggcatttgtgattgccgatgataagcgcattacccaagagattttaatcgctagt
gaagatcgcaatggtgcccgtcaaggcgatgtggtcgtggtggagttaacccgtcgtccg
ggccgattcgttaaagccgcgggtaaagtgactgaagtgctcggcaagcaaatggcgcca
gggatggaaatcgagattgcgctgcgtaattacgatcttccccatacttggtcggcagca
attgaaaagaaactacgccgtattcccgatgaagtgaccgaagcggataaggtcggccgt
gtcgatttgcgcaatcttccactagtgacaattgatggtgaagacgcacgcgactttgac
gatgcggtatatgcagaagctaaacccagtggcggttggcgtctgtgggtggcaattgcg
gatgtgagctactatgtgcgtaccgattcggccttagataccgaagcccgtgcccgtggt
aactcggtgtacttcccgtcgcaagtgatccctatgctgccggagaagatctctaacggc
ctgtgctcgctcaatcccgatgtcgaccgcttgtgtatggtcgcggagatgacgatttcg
gctcgcggtaagttatctggatataagttttatccagcggtgatgcattcacatgcgcgc
ttcacttacacccaagtggctgccatgctcgaaggtggaccgattgcgcctgaacatgaa
gcgctattcccgcatctacaatgtttacagtcgctctatttagcgctcgatgaacagcgc
gctgagcgtggtgcgattgcctttgagacgttagaaacgcagtttatttttaacgaccag
cgcaagatcgataaaattgtgccaagagcgcgtaatcaagctcataaaattattgaagaa
tgtatgattttggccaacgtatcggccgctaagtttgtgaaaaagcataagggcgaaatc
ctctatcgtgtgcatgagtcaccctctgaacaaaagttggcgaactttaaagagtttctg
gccgagcgcggtttaagcatgggtggcggactcgagccaacgccagcggattaccagaat
gtgatgctgcaaatcgccgataggccagatgccgagcttatccaagtgatgttgctgcgc
tcaatgcgccaagcaatctacacgcccgataacgaaggccattttggtttggcactggaa
gaatatgcccattttacctcgcctattcgtcgttatcccgacttagtgttgcatcgcgtg
atccgctatctactggcgaaggagaaaggcgaagccaatgagaagtggactcccgatggg
ggctaccattatcagctggatgaattagatcaattaggcgaagaatgttctacaacggag
cgccgtgccgatgaggcaacgcgtgatgtaagtgactggctgaaatgtgaatttatgcag
gaccatgtgggtgatacctttgaggcggttattgcctctgtcactaactttggtttattc
gttcgcttaaatgacttatttattgatggtttagtgcatatttctagcctgggcagtgat
tattatcaatttgaccctatgcgtcagcgtttgattggtgagcacacagggcaagtctat
caggtgggagatcctgtcacggtgaaagtggccgcggtaaacttggacgatagacaaata
gacttaatgatgcttggtgacagtggtaaaggtggacgccgcaaggcggcaccgagtcga
gataagcccatgacggcgcgtgaacgggtcaaccgtgaaggcgctaaaatggcgaaggcg
gcgaaatcgacaggtactaaagcgaaagctggctcagataaagcgggtagcaaatctaag
tctaaagctggcactaagcctaagaaaagcgtaaaagattcggcgaagaagccaaaggcc
gcaaagcggagcacgagaaagaagtaa
DBGET
integrated database retrieval system
