Shewanella sp. MR-4: Shewmr4_3424
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Entry
Shewmr4_3424 CDS
T00388
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
she
Shewanella sp. MR-4
Pathway
she03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
she00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Shewmr4_3424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
she03019
]
Shewmr4_3424
03009 Ribosome biogenesis [BR:
she03009
]
Shewmr4_3424
Enzymes [BR:
she01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Shewmr4_3424
Messenger RNA biogenesis [BR:
she03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Shewmr4_3424
Ribosome biogenesis [BR:
she03009
]
Prokaryotic type
rRNA helicases
Shewmr4_3424
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
AAA_30
HD_4
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ABI40490
LinkDB
All DBs
Position
4094664..4096532
Genome browser
AA seq
622 aa
AA seq
DB search
MSSSERTFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAF
ALPLLNKVTSQAVPQILVLAPTRELAVQVAEAFSSYAKFMKGFHVLPIYGGQSMHQQLNA
LKRGPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPEQR
QLALFSATMPEQIKRVANKHLKDATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLE
VENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKSGKLDILIA
TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE
RATNSRISPMKVPSPETVAERRLSRLGEQLAQTMTQDLDFMREAVAQLCQQLEVDTDLLA
AALLHQVQQERPLQLPAIQERTRDERNERSERGAERGERGERRSRESRPLPASLGSAEAL
KDNPDLKMCRYVIDVGRDNGVGVGNIVGAIANEANIDSRYIGAIQLYDAVTTVDLPDGMP
KEVLQHLKKVRVCGKPLNIREAGDQVFVDSGRGARSDRRPRGDRPMGERKPRSASGDKPF
ADRKPRSDKPAGERRPRKPREE
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccagtgaaagaactttccgtgaactcggcttgtccgagaatttgttgcgtgct
cttgacgagctaggttacgaaaaaccaacgccaatccaatcagccagtattgacccatta
atggctggcaaagatattttaggtcaggcacaaacaggcacaggtaaaactggcgccttc
gccctgcccctgctcaacaaagtgaccagccaagctgttccacaaatcctagtattagcg
ccaacccgcgaattagcggtgcaagtagcagaagctttcagcagctacgcgaaatttatg
aaaggtttccatgtactgccaatctatggcggtcagagcatgcatcagcaattaaacgcc
ctgaagcgtggtccacaggttatcgtgggtacaccgggtcgtgttatggaccatatgcgc
cgtggcaccttaaagctggaaaccctgcaagcgctggtactcgacgaagccgacgaaatg
ttaaaaatgggctttatcgacgatatcgaatggattctggaacacacgccagaacagcgc
caactggcactgttctcggccactatgccagaacaaatcaagcgtgttgctaacaagcac
ttaaaagatgcgactaacatcagcatcgctgcgagccacaccacagttgactctatcgag
caacgtttcgtgcaagtgtctcagcacaacaagttagaagccttagtacgcgtattagaa
gttgaaaatactgaaggtattatcatcttcgttcgtacccgtaactcatgcgttgaatta
gcagaaaaactcgaagcccgcggctacgcttcatcaccactgcacggtgatatgaaccag
caagcccgtgagcgtgcggttgagcagctgaaaagcggcaagctagacattctgatcgcg
accgacgttgcggctcgtggtctggacgttgagcgtatcggccacgtagtaaactacgat
atcccttacgatactgaagcttacgtacaccgtatcggtcgtactggccgtgctggccgt
acgggcatggcgattctgttcgtgaccagccgtgaaatgcgtatgctgcgcaccatcgag
cgcgcaaccaacagccgtatttcaccaatgaaggtaccaagcccagagacggttgcagaa
cgccgcctgtctcgcttaggtgagcaattagcgcaaaccatgacacaagatctggacttt
atgcgcgaagcagttgcccagttatgccaacaactggaagtggataccgatctgctggcc
gcagccctgctgcaccaagttcagcaagaacgcccactgcaattacctgcgattcaagag
cgtacccgcgatgaacgcaatgagcgcagcgaacgtggtgctgaacgtggcgagcgcggt
gaacgtcgcagccgtgaatcacgcccactgccagctagccttggcagcgccgaagcgtta
aaagacaacccagatctgaagatgtgccgttatgttatcgatgtaggtcgtgacaatggc
gtgggtgtgggcaacatcgttggcgctattgcaaacgaagctaacatcgacagtcgttac
attggtgctatccagttatacgatgcagtgactaccgttgacctgccagacggcatgcca
aaagaagtactgcagcatctgaagaaagtgcgcgtatgtggcaagccactgaacatccgt
gaagctggcgatcaagtcttcgtagactcaggccgtggcgcacgtagcgaccgtcgtcca
cgtggtgatcgtccaatgggtgagcgtaaaccacgttcagcctctggcgacaaaccattt
gctgaccgcaaaccacgttcagacaagccagcaggcgagcgtagaccacgtaaaccacgc
gaagagtaa
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