Shewanella sp. MR-4: Shewmr4_3491
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Entry
Shewmr4_3491 CDS
T00388
Name
(GenBank) diguanylate cyclase/phosphodiesterase
KO
K18765
RNase E specificity factor CsrD
Organism
she
Shewanella sp. MR-4
Brite
KEGG Orthology (KO) [BR:
she00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
she03019
]
Shewmr4_3491
Messenger RNA biogenesis [BR:
she03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Shewmr4_3491
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
AF_0924
Motif
Other DBs
NCBI-ProteinID:
ABI40557
LinkDB
All DBs
Position
complement(4174241..4176151)
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AA seq
636 aa
AA seq
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MKFTRMLTTKLTSFWLMSLAAIAFVFLLSAMMSFVQLTYKFQQQKVSELESLLIEHYQTQ
PEWELESWLPPMLLAYNAVEFRLTMKSEVLFAYQGNVQTQNAMVYTHLLDPQSGLNMTLT
LPQPFEHYSVSWYELLILGIGLLAVIALVRFGHVWFSQQLDGIEELAQRSRLILQGKHEQ
ALATPGNGKPRLINRALTKLLEELQDAHKERGRFDKFIRSNTFLDAQTRIGNRLFLNNRL
DALSHDQGMVAHGVIYLLEMDDLDLLQQAKGESAVKELLHATVNSINSILQTLPNSIFAR
RSHNQFAIVVPHVSLIEADQLASKLLKVCLSQPLPDDVENQDNFYHLGCAYFTAGDNVNQ
LLDEADMALRAAQLQGNSNWFMYDKGAIDEEFAKGSVRWRSFLENALVQRRFYPFSQPVM
DSDGVEHHKEIFTRARDNQGALVRATLFIPMANKCGLMPQVERQMIERVLGLLAQEQHKN
QVYSVNLSLDTLMSRAFTQWLKTTLLEYRHLTPQLMFEVSEDIVIQHQDKLKSKLDMIRK
MGARLCVDHVGQQVVGTYYIRECHFDMIKLHRSIVRHIHLRPENQLFIRSLIGGLYRTEV
QVCAEGIEVFEEWQTLQILGVGMAQGTYFSDPIEVQ
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcactcgaatgttaactactaaattgaccagtttttggttaatgtctttggcc
gctatcgccttcgtatttttactcagcgccatgatgagctttgtgcagttgacctataag
tttcaacagcaaaaagtgtctgagcttgaatccctattaattgagcattaccagacccaa
cccgagtgggagttagagtcttggttgccgccgatgctgctggcgtataacgccgtcgaa
ttccgtttaaccatgaagagcgaagtgctctttgcctatcagggcaatgtgcagacgcaa
aatgccatggtctatacccatctgctcgatccccaatcggggctcaacatgaccctcacg
ctgccacagcccttcgagcattacagcgttagttggtatgagctgctcattttggggata
ggcttgctggcggtgatcgcgctggtgcgttttggccatgtgtggttttcgcagcagtta
gatggaattgaagagcttgcccagcgcagccgcctcattttgcaaggcaaacacgagcaa
gcgctcgcaacgccgggcaatggtaaacctaggctcatcaaccgagccttaactaagcta
cttgaagaattacaggacgcccacaaagagcgcggccgtttcgataagtttattcgctcc
aatacttttttagatgcgcaaacccgtatcggtaatcggttgtttttaaataaccgtctc
gatgccttaagtcacgaccaaggcatggtggcccacggggtgatttatctgttggagatg
gacgacctcgatttactgcaacaggcaaaaggggagagcgcggttaaagagttgctccat
gcgacggtgaacagcattaactccattttgcagactttacccaacagcatttttgcacgt
cgctcccataaccaatttgcgatcgtcgtgccccatgtgtctttgattgaggccgatcaa
ctggccagcaaattactcaaagtctgtttgagccaacctttgcccgacgatgtagagaat
caagacaacttttatcacttgggctgcgcttactttaccgctggggataatgttaatcag
ctgctcgatgaagccgatatggcattacgcgccgcgcaattacaaggtaacagtaattgg
tttatgtacgataagggcgcgattgatgaggagtttgccaaaggctcggtgcgttggcgc
agcttcttagaaaatgccttggttcagcgacgtttttatccctttagtcagcctgtgatg
gactcagacggcgttgagcatcacaaggagatctttactcgggcgcgggataatcagggc
gcgttagtgcgggcgacactctttattcccatggccaacaaatgtggtttgatgccccag
gttgagcggcagatgattgagcgagtgcttggcttgttggcgcaagagcagcataaaaat
caagtctatagtgtgaatctaagcttagataccttaatgagccgtgcctttactcaatgg
cttaaaaccactttgctcgaatatcgacacctgacgccacaactgatgttcgaggtgtca
gaggacatcgttatccagcaccaagacaagcttaagtctaagctggatatgatccgtaag
atgggggcgcgcctgtgtgttgaccatgtgggtcagcaggtagtggggacttactatatt
cgagagtgccacttcgacatgataaaactgcataggtcgatagtgcgacatattcattta
cgcccagaaaatcaattatttattcgcagtctcatcggtggtttatatcgcaccgaagtg
caagtgtgtgccgagggtattgaggtatttgaagaatggcaaaccctacaaatcctcggt
gtgggtatggcgcagggcacctattttagtgaccccattgaggtgcaatag
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