Shewanella sp. MR-4: Shewmr4_3590
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Entry
Shewmr4_3590 CDS
T00388
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
she
Shewanella sp. MR-4
Pathway
she03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
she00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Shewmr4_3590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
she03019
]
Shewmr4_3590
03400 DNA repair and recombination proteins [BR:
she03400
]
Shewmr4_3590
Enzymes [BR:
she01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Shewmr4_3590
Messenger RNA biogenesis [BR:
she03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Shewmr4_3590
DNA repair and recombination proteins [BR:
she03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Shewmr4_3590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
ABI40654
LinkDB
All DBs
Position
complement(4296813..4298636)
Genome browser
AA seq
607 aa
AA seq
DB search
METQLLDIHDDPLSQRLAQVFGYRDFRDGQREVIERVCSGEDCLVIMPTGGGKSLCYQLP
ALLMPGITIVVSPLISLMKDQVDSLLQTGVNAAYLNSSQPREQSVEVLRQLHRGELKLLY
VSPERLLTADFIERMRSLPLSMFAIDEAHCISQWGHDFRPEYAALGQLKQLFPHVPMMAL
TATADQATRQNICERLGINPFKLLSSFDRPNIRYTVAEKLNAANQLRQFLLQQNGSSGIV
YCSSRRRVDEVAERLTLQGFHAKAYHAGMTPQERGEVQDSFLKDQIDIVVATVAFGMGIN
KSNVRFVVHYDIPKSIEAYYQETGRAGRDGLEAEAFMLFDPADIGRVRHLIEQSEPGPQQ
QVDFHKLNTMAAFAEAQTCRRQVLLHYFDESALEPCGNCDICLDPPKRYNGTEDAQKVLS
CIYRIGQRFGINHLIEVLRGSKGAAIVDRGHDKLSTWGIGKDKSHEYWLSVIRQLIHLGL
ASQDITRGSSITLNPSARPILKGEVALMLAEPRIQLTNIKRKVTQSRAPLNYDRKLFARL
KALRRTIAEEQDVPPYLVFNDATLAEMAAMMPTSPGEMLAVNGVGERKLSRFGDDFLDEI
AAYLAGE
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggaaactcagttactcgacatacatgatgatccgctgtcacaacgcctagcgcaggtg
tttggttaccgtgactttagggacggtcagcgtgaggttatcgaacgtgtatgcagtggt
gaggactgccttgtgatcatgcccactggcggcggtaagagtctgtgttaccagttgcct
gcactgctgatgccaggcatcactatcgtggtatcaccactgatttcattgatgaaagat
caggtcgacagcctgttgcagacgggggtcaatgccgcctatttaaactcctcgcagccg
cgggagcagagtgtagaggtgcttaggcagttgcatagaggcgagctaaaactgttgtat
gtgtctcctgagcggttactgacggccgattttatcgagcgtatgcgctccctgccgcta
tccatgtttgccattgacgaggcgcactgcatcagtcaatggggacacgattttcgtccc
gaatatgccgcccttggccagttaaagcagttatttccccatgtgcctatgatggcgctc
accgccactgcggatcaggcgacacggcaaaatatttgcgagcgcctagggattaatcct
tttaaattactatcgagtttcgatcggcccaatattcgctatacggttgccgaaaaactc
aatgccgctaatcagttacgacagtttttactgcagcaaaatggcagcagtggcattgtc
tactgcagcagtcgacgccgtgtggatgaggtggctgaaagactcaccctgcaagggttt
catgctaaggcatatcatgcgggcatgacgccacaagagcgcggtgaagtgcaggatagc
tttcttaaagatcaaattgatattgtcgttgctacagttgcctttggcatggggattaac
aaatccaacgtgcgctttgtggtccattacgatatcccgaagagcatcgaagcctattat
caagaaactggccgagcgggccgcgatggactcgaggccgaagcttttatgctgtttgat
cctgccgatattggtcgggtgcgccatcttatcgagcagtctgagccagggccgcagcag
caagtggatttccataaactcaataccatggctgcatttgctgaggcgcaaacctgtcgc
cgccaagtgttgctgcattacttcgatgaaagcgcgttagagccctgcggcaactgcgat
atttgtctcgacccacctaaacgttataacggcaccgaggatgcgcagaaggtgctatct
tgcatctatcggatcggacaacgctttggtatcaatcacttgattgaagtgttgcgtggc
tccaagggcgctgcaattgtcgaccgaggacacgataaactcagcacttggggcataggc
aaagacaaaagccatgaatattggttgagtgttattcgtcagctcatccatttggggctg
gcgagccaagatattactcggggctcatccatcaccttaaacccttcggccagaccgatc
cttaagggcgaggtggcgctaatgttggcagagccgcgtattcaactgacgaacattaag
cgcaaagtcactcaatcgcgggcaccgctgaattacgaccgcaaactgtttgcgaggcta
aaagccctacgtcgcaccattgccgaggagcaggatgtgccgccatatttggtgtttaac
gatgcgaccttagcggaaatggcggccatgatgcctaccagccccggtgaaatgctggct
gttaacggggtcggtgagcgcaaactcagccgatttggcgacgatttccttgatgagata
gccgcttatttagcgggggaataa
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