Shewanella sp. MR-4: Shewmr4_3617
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Entry
Shewmr4_3617 CDS
T00388
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
she
Shewanella sp. MR-4
Pathway
she00061
Fatty acid biosynthesis
she00071
Fatty acid degradation
she01100
Metabolic pathways
she01212
Fatty acid metabolism
she02024
Quorum sensing
she04146
Peroxisome
Module
she_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
she00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Shewmr4_3617
00071 Fatty acid degradation
Shewmr4_3617
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Shewmr4_3617
09145 Cellular community - prokaryotes
02024 Quorum sensing
Shewmr4_3617
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
she01004
]
Shewmr4_3617
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
she04147
]
Shewmr4_3617
Enzymes [BR:
she01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Shewmr4_3617
Lipid biosynthesis proteins [BR:
she01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Shewmr4_3617
Exosome [BR:
she04147
]
Exosomal proteins
Exosomal proteins of breast milk
Shewmr4_3617
Exosomal proteins of breast cancer cells
Shewmr4_3617
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
AMP-binding_C
Motif
Other DBs
NCBI-ProteinID:
ABI40681
LinkDB
All DBs
Position
4324195..4325859
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AA seq
554 aa
AA seq
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MDNAIKTPVEMLAHWANTRGDEIYLRQPIKGQYLDFTWNEVQEKVQQLAGALRHLGLEPG
DKIAVLSKNCAEWFITDLALMHGGYISVPIYPTANTDTIRYVLQHSGAKAIFLGKLDHWA
DQEAGVGGELLRLAMPYETMPAQYQWEQLLKMGNPLIEAPLPELDQTMTLIYTSGSTGQP
KGAIQTFASYGWTCQAVVRDLRTNGDDRLLSYLPLAHITERVAIEGSSFYSGSTVAFVES
LDSFVADVQRAKPTVFFSVPRLWSLFQKNIIDKIGVGKLNLLLKIPLISSLVKHKIHKGL
GLNHCRLLGSGSAPIPPSLIHWYHSIGLDICEAWGMTENCAYSIINYPFDVRKIGTVGKP
VQDCQIRQGEDGELLLKSPGLMTAYYQQPEATAAAFDPDGFFHTGDLCAIDADGCVTITG
RVKDNFKTAKGKYVAPVPIERKLAQDPHVELICVIGSGLPHPVALVQLSEGATLQAREEV
RASLKATLDSVNPHLESHEHVDAIVVVNEPWTIENDVLTPTLKIKRHVLEKAFSERVDGI
RGAQVRWEDELTVK
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atggataatgcgattaagacgccagttgaaatgttggcgcactgggcgaatacacgtggg
gatgagatctatttgcgccagcccatcaagggtcaataccttgatttcacgtggaatgaa
gtgcaagaaaaagtgcagcaactcgcgggtgcactgcgccatttaggcttagagccgggc
gataagattgccgtgctctctaaaaactgcgccgaatggtttattaccgacctcgccctg
atgcacggcggctatatcagcgttcccatctatcctaccgccaatacagatactatccgc
tatgtgttgcaacatagtggtgccaaagcaattttcctcggcaagctcgaccactgggcc
gatcaagaagccggcgtcggcggcgaattactccgccttgccatgccctatgagaccatg
ccggctcaatatcagtgggaacaactgctcaagatgggcaaccctctgattgaagcgccg
ttacctgagctcgatcagaccatgaccctgatttacacctcgggctcaacgggccaacct
aaaggcgcgattcagacgtttgccagctatggctggacttgccaagccgtagtgcgcgat
ctgcgaaccaatggtgacgacagattattgtcctacttaccgttagcgcatattaccgag
cgcgtggcgatcgaaggctcgtctttctattccggcagtacagtcgccttcgtcgaaagc
ttagactccttcgttgccgatgtgcagcgcgctaaaccgacggtgtttttctcggttcca
cggctatggagcctgttccagaagaacattatcgacaagattggtgttggcaaactcaat
ctattgctaaaaatcccactgattagcagcctagtaaaacacaagatccacaaagggtta
ggactcaaccattgccgcttactcggctctggttcggcgcctattccgccctctcttatt
cactggtaccacagcattggcttggatatttgtgaagcctggggaatgacggaaaactgt
gcttactccatcatcaactatcccttcgatgtgcgcaaaatcggcactgtgggtaaaccc
gtacaggattgccaaatccgccagggtgaagacggcgaactgctactgaagagtcccggc
ctgatgacggcctattatcagcaacccgaagcaacagcggcggccttcgatcccgatggt
ttcttccatactggcgatctctgtgccatcgatgccgatggttgtgtgactatcactggc
cgggtgaaggacaactttaaaaccgctaagggtaaatacgtcgctccagtgccaattgaa
cgtaagctcgcgcaggatccccatgtggagctgatttgcgttattggttctggtctgccg
catcccgtcgcgttagtgcaactttccgagggcgcgaccttacaagcccgcgaggaagtt
cgcgcatctttaaaagcgaccctcgatagcgtgaacccacatttagagtcccatgaacat
gtggatgcgattgtggtcgtgaacgaaccttggaccatcgaaaacgatgtgctaactccg
acactgaagatcaaacgtcatgtgctcgagaaagcctttagcgagcgtgtcgacggtatt
cgcggcgcacaagtgcgctgggaagatgagttaaccgtcaaataa
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