Shewanella sp. Arc9-LZ: GUY17_00765
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Entry
GUY17_00765 CDS
T10509
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
shea Shewanella sp. Arc9-LZ
Pathway
shea03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
shea00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GUY17_00765 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shea03021
]
GUY17_00765 (rpoC)
03400 DNA repair and recombination proteins [BR:
shea03400
]
GUY17_00765 (rpoC)
Enzymes [BR:
shea01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GUY17_00765 (rpoC)
Transcription machinery [BR:
shea03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GUY17_00765 (rpoC)
DNA repair and recombination proteins [BR:
shea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GUY17_00765 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QHS11746
LinkDB
All DBs
Position
163104..167330
Genome browser
AA seq
1408 aa
AA seq
DB search
MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTTLERGQMLTEETYLDALEEYGDEFEAKM
GAEAVLELLRAINLAEQIEQMREELPSINSETRRKKVTKRLKLMEAFFTSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEARGLATTIKAAKKMVEREQAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPVITPSQDVVLGLYYTSRECINGRGEGMAFADVSEVEKAYATG
VAELHARVKVRITETNIAEDGERTKATRIIDTTVGRALLSLILPEGLSYDLVNQNMGKKQ
ISKLLNTCYRQLGLKDTVIFADQLMYTGFRFATISGASVGIDDMVIPDEKYTLVADAEAE
VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSTETVINRDGVPEQQASFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGVEHGLTMKPLIEGGDVVEPLRERVL
GRVVALDVMKPGTDEVLAPRNTLLDEAWCNTLEEHSIDEVIVRSVITCDTDFGVCAACYG
RDLARGHIINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNAGSLKL
HNAKHVSNIDGKLVIVSRSSELAIIDELGREKERYKVPYGTVLEKLEESEVAAGEIIANW
DPHTHPIISEVAGSVKFVDMIDGVTMTRQTDELTGLSSVVVLDVGARTSAGKELRPAIRL
VDADGNDLMIPGTEVPAQYFLPGNAIVSKDDNAKINVGDPLARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPADGSEHYEEMIPKWRNLNVFE
GEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCLITSTGDTEFLEGEQAEVSRVKIANRELIAQGKTPATFERELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDPLRGLKENVIVGRLIPAGTGYAYHKTRNEERAKVLSSR
GKVETTTVTASEAEKNLADLLNLAGSQD
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttcttaaacagcaaagtaagactgaagaatttaacggtata
aaaattggtttggcctcgccagacctaatccgttcttggtcttttggtgaagtaaagaag
ccagaaaccattaactaccgtacattcaagcctgaacgtgaaggtttgttctgtgcgcgt
atctttggtccagttaaagattacgaatgtttgtgtggtaaatacaagcgtttgaagcat
cgtggtgttatttgtgaaaagtgtggcgtagaagttacccagactaaagtgcgtcgtgag
cgcatgggtcacattgatctggctagcccagttgcccacatttggttcttaaaatcactt
ccgtcacgtatcggcttaatgctagatatgacgttacgtgatattgaacgcgtactgtat
ttcgaatcatttgttgtgatcgagcctggcatgaccacgcttgaacgcggccaaatgcta
accgaagaaacgtatcttgatgcgttagaagaatacggtgacgagtttgaagctaagatg
ggtgctgaagccgttcttgaattgctacgtgctatcaacttagctgaacagatcgagcaa
atgcgtgaagagttgccttcaattaactctgaaacccgtcgcaagaaggtcactaagcgc
cttaagctgatggaagcattcttcacatctggcaacaagccagagtggatgatcttaaaa
gtattaccggttcttccacctgatctacgtccattagtgccgttagatggtggtcgtttc
gcgacatctgatcttaacgatctttatcgtcgtgtgattaaccgtaacaaccgcttaaag
cgtctgttagatttagctgcgcctgacattatcgtacgtaacgaaaaacgtatgttacaa
gagtcagttgatgcgctattagacaacggtcgtcgcggtcgtgctattaccggttctaac
aagcgtccgcttaaatctcttgctgatatgatcaagggtaagcaaggtcgtttccgtcag
aacttacttggtaagcgtgttgactattcaggccgttcggtaattaccgtaggtcctact
ttacgtctgcatcagtgtggtcttcctaagaagatggcgcttgagctattcaaaccattc
atttacggcaaattagaagcgcgtggtttagcgactactattaaagctgctaagaaaatg
gttgaacgcgaacaggctgaagtatgggatgtgttagacgaagtaattcgtgaacatcca
gtcatgcttaaccgtgcaccaacacttcacagactgggtattcaagcatttgaacctgta
ctgattgaaggtaaagcaattcaattgcatccgttagtttgtgcggcatacaacgccgac
ttcgacggtgaccaaatggcggttcacgtaccattaacgcttgaagctcagttagaagct
cgtgcgctaatgatgtctaccaacaacattttgtcaccagctaacggtgagccagtaatt
actccgtctcaggacgttgtattaggcttgtactacaccagccgtgaatgtattaacggt
cgcggtgaaggtatggcattcgctgatgtgtcagaagtagaaaaagcttacgctactggt
gttgctgaactacatgctcgcgttaaagtgcgtattactgaaacgaacatcgcagaagat
ggcgaaagaacgaaagcaactcgtatcattgatacgactgtgggtcgtgctcttttatca
ttaattttgcctgaaggcttatcgtatgatttggttaaccaaaacatgggtaagaaacag
atttctaagctgttgaacacttgttatcgtcaactaggtcttaaagataccgttatcttt
gctgaccaattgatgtatacaggtttccgttttgcaaccatttctggtgcctctgttggt
atcgatgacatggttattccagacgagaaatacaccttagtagcagacgctgaagctgaa
gtacttgaaattcaagagcagttccagtcaggtcttgttactgccggtgagcgttacaac
aaagttatcgatatctgggcaagcgcgaacgaaaaagtttcaaaagcgatgatggaaaac
ctgtcaactgagacagtgattaaccgtgatggcgtacctgagcaacaagcttcgtttaac
agcatctatatgatggctgactcgggcgctcgtggtagtgctgcacagatccgtcagtta
gcgggtatgcgtggtttgatggctaagccagatggctcaatcatcgaaaccccaattacg
gctaacttccgtgaaggtctaaacgtacttcagtactttatttctactcacggtgcgcgt
aaaggtcttgccgatacagcattgaagacagctaactcgggttatctaactcgtcgttta
gtagacgttgcacaagacttagtggttatcgaagatgactgtggtgttgagcatggtctt
acaatgaaaccgcttattgaaggtggtgatgttgttgagccattacgtgaacgtgttcta
ggtcgtgtggttgctcttgacgtaatgaagcctggtactgatgaagtgcttgctccacgc
aacacacttcttgatgaagcatggtgtaatacgttagaagaacacagtattgatgaagtg
attgtacgttctgtaattacctgtgacacagacttcggtgtgtgtgcagcgtgttatggt
cgtgacttggcgcgtggtcatattattaaccacggtgaagctattggtgttgttgcagca
cagtctatcggtgagcctggtacacagttaaccatgcgtaccttccacattggtggtgcg
gcatctcgagcttctgcagaaaacaacgttcaagttaagaacgccggttctctgaagtta
cacaatgctaagcatgtctctaacatcgacggtaagctcgttatcgtatcgcgttcttct
gagttagccatcatcgatgagctaggtcgtgagaaagagcgttataaagtgccttacggt
acagttttagagaagttggaagagagtgaagttgcagctggcgaaatcatcgctaactgg
gatccacatactcacccaattatttctgaagttgcaggtagtgtgaagttcgttgacatg
attgatggtgtcactatgacgcgtcaaacagatgagttaacgggtctatcttctgtcgtt
gtgctcgatgttggtgcgcgtacttcagccggtaaagaattgcgtccagcaattcgctta
gttgatgccgatggtaatgacttaatgatccctggtactgaagtaccagctcaatacttc
ttaccgggtaacgcgattgtatcgaaagatgataacgcaaaaatcaacgttggtgaccca
ttagcacgtattccacaagaatcgtctaaaactcgcgacatcaccggtggtctaccacgt
gttgctgacttattcgaagcgcgtaaaccaaaagagcctgcaattcttgcagaaatctct
ggtactatctcgttcggtaaggaaactaagggtaaacgtcgtctagtgatcactcctgca
gatggtagtgaacattatgaagagatgatccctaagtggcgtaacttgaacgtgttcgaa
ggtgaaaaagtcgaacgtggtgaagttattgcagacggtccagaagcggctcatgacatc
ttgcgtcttcgtggtatccacaacgtagcaaactacattgtgaacgaagtacaggacgtt
taccgtctacagggcgttaagatcaacgataagcacatcgaagttatcattcgtcaaatg
ttacgtaagtgtctaatcacttcaacaggcgacactgagttcttagaaggtgagcaagca
gaagtatcacgcgtgaagattgctaaccgtgagctaatcgctcaaggtaaaacacctgca
acgtttgaacgtgaattactcggtattaccaaagcttctttggcaactgaatcattcatc
tctgctgcatcgttccaggaaaccactcgtgtgttaactgaagcggccgttggcggtaag
agcgatccactacgtggtttgaaagaaaacgtaatcgtaggtcgtttgatcccagcaggt
acaggttatgcttatcacaaaacccgtaacgaagaacgtgctaaagtattaagctctcgt
ggcaaagtggaaactactacagtaaccgcaagcgaagctgaaaagaacctagcagatcta
ctaaatctggccggtagccaagattaa
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integrated database retrieval system
