Shewanella sp. Arc9-LZ: GUY17_03500
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Entry
GUY17_03500 CDS
T10509
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
shea Shewanella sp. Arc9-LZ
Brite
KEGG Orthology (KO) [BR:
shea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
shea03009
]
GUY17_03500 (dbpA)
Enzymes [BR:
shea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GUY17_03500 (dbpA)
Ribosome biogenesis [BR:
shea03009
]
Prokaryotic type
rRNA helicases
GUY17_03500 (dbpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
Helicase_C_2
AAA_19
CMS1
Motif
Other DBs
NCBI-ProteinID:
QHS12249
UniProt:
A0AAE6VRQ5
LinkDB
All DBs
Position
789021..790424
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AA seq
467 aa
AA seq
DB search
MSQSTEQVVNTAFASLKLKPELLENLQTMGFESMTQIQAESLPPILAGEDVIGQAMTGSG
KTAAFGLGLLNKLDVKRFRIQTMVLCPTRELADQVAKDIRTLARGIHNVKVLTLCGGVPM
GPQVGSLEHGAHIIVGTPGRIVDHLDRNRLDLSNMNMLILDEADRMLEMGFQQHIDQIIA
AAPRERQTLLFSATFPDQIQAIADQILYKPVMVKVEAKHDNLTIDQHFYRIEDNQGRLEA
LRLLLLDKQPGSAVVFCNTKRETQQVADSLHEFGFSVLALHGDLEQRDRDQMLLQFANRS
ARILVATDVAARGLDIDELDAVFNYHIAYDTEVHIHRIGRTGRAGSSGAAYTFFGEEDGY
KMAMIEEAMNKDVVSEPLPPMSALNKQPLAAEMITIQIEAGKKQKIRPGDIVGALTGGNG
LDFNDIGKIKVTDFRAYFAVKSNVSKQAMNIISKGKLKGRSYRAWFM
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcagtctacagaacaagtcgttaacacggcttttgcatcacttaaattaaaacct
gaattgcttgaaaacctccaaactatgggttttgaatcgatgactcagatccaagctgag
agcttaccgcctattttggccggtgaagatgttatcggccaagcgatgacaggttcaggt
aaaacagctgcctttggtttaggattgcttaataaactggatgtaaaacgttttcgcatc
caaaccatggtgctttgtccaacgcgtgagttagccgaccaagtagcgaaagacattcgt
accttggcccgtggtatccataacgttaaagtactaacgctatgtggcggcgtacctatg
gggccacaagttggctcattggaacacggagcacacattattgtcggtacaccgggtcgt
attgttgatcatttagatcgcaaccgtttagatttaagtaacatgaacatgctgatttta
gatgaagctgatcgcatgttagaaatgggcttccaacagcacattgaccaaatcattgca
gcggcccctcgtgaacgtcaaacattgctgtttagtgccacgttcccagatcaaatccaa
gcgattgccgatcaaattctgtataaaccggtaatggttaaagttgaagctaaacacgat
aacctcactatcgatcagcacttttatcgtattgaagataaccagggccgtcttgaggca
ttgcgtttattgttattagataagcagcctggaagcgcagtcgtgttttgtaataccaag
cgtgaaacccaacaagtggctgactcattacatgagtttggctttagcgtactagcatta
catggcgatttagagcagcgcgatcgcgatcaaatgttattgcagtttgctaaccgtagt
gcgcgtattttagttgctaccgacgtagctgcacgtggtttggatattgatgagttagac
gcagtatttaactatcatattgcttacgatactgaagtgcatattcaccgtatcggccgt
actggccgtgctggcagttctggagccgcatatactttctttggtgaagaagacggttac
aaaatggcgatgattgaagaagccatgaacaaagatgtcgtcagtgagcctttaccgcca
atgagtgcgctcaacaagcaaccgcttgctgctgaaatgatcaccattcagattgaggcg
ggtaaaaagcaaaaaatccgtcctggtgacattgttggtgcattaacgggtggcaatggt
ttagattttaacgatattggcaaaattaaagtgactgattttcgcgcttactttgccgta
aaaagcaatgtgtctaaacaagcgatgaatatcatcagtaaaggtaagttaaaaggccgt
agctatcgtgcgtggttcatgtaa
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