Shewanella sp. Arc9-LZ: GUY17_03505
Help
Entry
GUY17_03505 CDS
T10509
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
shea Shewanella sp. Arc9-LZ
Pathway
shea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GUY17_03505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shea03019
]
GUY17_03505
Enzymes [BR:
shea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GUY17_03505
Messenger RNA biogenesis [BR:
shea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GUY17_03505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
AAA_30
HEM4
Flavi_DEAD
CMS1
UvrD-helicase
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QHS12250
LinkDB
All DBs
Position
complement(790574..792007)
Genome browser
AA seq
477 aa
AA seq
DB search
MSFSSLGLNAAILKAVEKQGYDTPSPIQAQAIPAVLAGQDVMAAAQTGTGKTAGFTLPIL
ELLSKGERAQRGQVRALVLTPTRELAAQVQESVATYGINLPLKSAVVFGGVSIVPQLAAL
RNGVDILVATPGRLLDLCQQKAISFNKLEILVLDEADRMLDMGFIRDIKKVLALLPAKRQ
NLMFSATFSNEIRELAKGLVNNPVEISVTPRNATANTVTQCVYPVDKTRKSMALIELIKT
NDWKQVLVFSRTKHGANRLAKSLEAAGIKAAAIHGNKSQTARTKALADFKAGAVQVMVAT
DIAARGIDIDQLPFVVNFDLPNVPEDYVHRIGRTGRAGSTGQAVSLVGLEEVKLLHDIER
LINRVIERKQLAGFEAPFTIPEASSRSGGNSAKKPNPNRSKHAQQHANDGAQGDKPARKP
DSRQPSRSHDKPADPKAEARANGNKPPQRNRPPRRSGTAPVVSANSNNPYANAKVKS
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgagtttttcctcacttggtctgaatgctgctattttaaaagcggttgaaaaacaaggt
tatgacaccccctctccaattcaagcacaagcaattccagctgttttagccggtcaagat
gtaatggcagcagcacaaacagggacaggaaaaacagctggttttaccttaccaatttta
gaattattatctaaaggtgaacgagcgcaacgtggtcaagtccgtgcgctagtattaaca
ccaacacgcgaacttgccgcgcaagtacaagaaagcgtcgccacttacggcatcaactta
ccgttaaaatcagccgtagtctttggtggcgtgtccatcgtgccacaattagctgcgctc
agaaatggtgtcgacattctggtcgcaacgccaggccgtttactcgacttatgtcagcaa
aaagccattagctttaacaaattagaaattctagtgttagacgaagcagaccgcatgcta
gacatgggctttattcgcgacattaaaaaagtattagcattattacccgctaagcgtcaa
aacttgatgttttcagcaacattctcgaatgaaattcgtgaacttgctaaaggcctggtt
aacaatccggtagagatttcagttacgccgcgtaacgcaacagcaaacaccgtgacccaa
tgtgtgtatccagtggataaaacccgtaaatcaatggcgctaatcgaactgattaaaacc
aatgattggaaacaggtgttagtgttttctcgtaccaaacatggtgctaaccgtttagcg
aaaagcctagaagctgctggcatcaaagccgctgccattcatggcaataaaagccaaaca
gcacgcactaaagcattggcagattttaaagccggtgccgtacaagttatggtcgcaaca
gatattgccgcgcgtggcatcgacatcgatcaactgccatttgtggttaactttgactta
cctaacgtacctgaagattatgtgcatcgtattggccgtaccggccgtgctggttcaaca
ggtcaagctgtatcattagtgggtcttgaagaagttaaattactgcatgatatcgagcgt
ttaatcaatcgtgttattgagcgtaagcaacttgctggttttgaagcaccattcactatc
cctgaagcgagtagcagatctggcggtaatagcgctaaaaagccaaacccgaatcgcagt
aaacatgctcaacagcatgcaaatgatggcgctcaaggtgataaaccagcgcgtaaacct
gactctcgccaaccatcacgcagtcacgataagcctgcagatcctaaagcggaagctaga
gcgaatggtaataaaccaccacagcgtaatcgtccaccacgtcgcagtggtactgcacca
gtagtgtcagccaatagcaataatccttatgccaacgctaaagttaaaagctaa
DBGET
integrated database retrieval system
