Shewanella sp. Arc9-LZ: GUY17_05370
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Entry
GUY17_05370 CDS
T10509
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
shea Shewanella sp. Arc9-LZ
Pathway
shea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GUY17_05370 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shea03019
]
GUY17_05370 (pnp)
03016 Transfer RNA biogenesis [BR:
shea03016
]
GUY17_05370 (pnp)
Enzymes [BR:
shea01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
GUY17_05370 (pnp)
Messenger RNA biogenesis [BR:
shea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GUY17_05370 (pnp)
Transfer RNA biogenesis [BR:
shea03016
]
Prokaryotic type
tRNA degradation factors
GUY17_05370 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH_2
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
S1_2
Motif
Other DBs
NCBI-ProteinID:
QHS12589
LinkDB
All DBs
Position
1238827..1240923
Genome browser
AA seq
698 aa
AA seq
DB search
MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKVADLSRDFFPLTV
NYQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVD
PQIEPDIVSMIGTSAALAISGIPFSGPLGAARVGYINDEYVLNPTVDQLATSSLNLVVAG
TKAAVLMVESEAKALAEEIMLGAVTYGHDQQQVVVDAIAEFKAEAGKPTWDWIAPVQDQV
LVAKIKDLAEAGMTEAYQIEVKQDRYVQVGIVKSTAKAALVAENPDVDTREVDNLLGSLE
KSVVRGRIISGKPRIDGREPDMIRALSVLAGVLPRTHGSSLFTRGETQALVTCTLGTERD
AQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGMNAVMPSAEEF
PYSIRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI
LGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAI
GSHRDDISAHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELDDNGTVKIASSN
GEATKEAIRRIEEITAEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVAN
VSDHLEMNQEVAVKVMEVDRQGRVRLSIKEAQAKETAE
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
gtgaatccaattgtaaagagttttgagtatggtcaacatacagtcaccttagaaacaggt
gttattgcacgtcaagctgatgctgcagttttagcaagcatgggcgataccacagtatta
gttactgtagttggtaaaaaagtagcggatttaagccgtgacttcttcccgctaactgtt
aactatcaagaaaaaacctatgctgcaggtaaaattcctggtggtttcttcaagcgtgaa
ggccgtccatcagaagatgaaactctgattgcgcgtctaattgaccgtcctattcgtcct
ttattccctaacggttttaaaaacgaagttcaagttatcatcactgtggtttctgttgat
ccacaaatcgagccagatattgtttcgatgattggtacctcagcagcgttagctatttct
ggtattcctttcagtggcccactaggtgctgcgcgtgttggttatatcaacgatgaatat
gtacttaacccaacagttgatcagcttgcaacaagttcactaaacctagtggttgcgggt
actaaagctgctgtacttatggttgaatctgaagctaaagcgcttgcagaagaaatcatg
ttaggtgcggtaacttacggacatgatcaacaacaagttgttgttgatgctattgccgag
ttcaaggctgaagctggcaaaccaacatgggattggattgcaccagttcaagatcaagtg
ttagttgctaaaatcaaagatcttgcagaagctggcatgacagaagcttaccaaattgaa
gttaaacaagaccgctatgtacaagtcggtattgttaaatctactgctaaagctgcacta
gttgcagagaatccagatgttgatactcgtgaagtagacaacttactcggtagtttagag
aaaagcgttgttcgcggccgtattatcagtggtaagcctcgtatcgatggtcgtgaacca
gatatgatccgcgcgttaagtgttttagcgggtgtacttccacgtactcacggtagttca
ttatttacacgtggtgaaactcaagcattagtaacctgtactttaggtactgaacgtgat
gcgcagaagattgatagcatcatgggcgaacgtactaatcgctttatgcttcattataac
ttccctccgtattctgttggtgaaacaggtatggttggctcacctaagcgccgcgaaatc
ggtcatggtaagttagcatggcgtggtatgaatgccgtgatgccttcagctgaagaattc
ccgtacagcattcgtgttgtatctgaaattactgaatctaacggttcaagctcaatggct
tcagtatgtggtacttcattagcattgatggatgcaggtgtaccaatcaagacttctgtt
gcgggtattgcaatgggtctagttaaagaaggcgacgatttcgttgtgctttctgacatc
ttaggcgatgaagatcacttaggcgatatggactttaaagtagccggtactcgtgatggt
attactgcattgcagatggatatcaaaatcgaaggtatcactaaagaaatcatggatatc
gcactgcaacaggcttatggtgctcgtgttcatattctaaacgttatggatcaagctatt
ggttcacatcgtgacgatatttctgcccatgctccacgaatcactaccatcaagattaac
cctgagaagatccgtgacgttattggtaaaggcggtgcggtaattcgtgcgcttaccgaa
gaaacgggtactacgattgagcttgatgataatggtactgtgaagattgcctcttcaaac
ggtgaagcgactaaagaagcaatccgtcgtattgaagaaatcactgcagaagttgaagtg
ggccgtatctacaacggtaaagttattcgtatcgttgattttggtgcgttcgttaacatt
cttcctggtaaagacggtttagttcacatctcgcaaattagcgatgagcgtgttgctaac
gtgtcagaccatttagagatgaaccaagaagttgctgttaaagtaatggaagtggatcgt
caaggtcgtgtaagactatcaattaaagaagctcaagcgaaagaaactgctgagtaa
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