Shewanella sp. Arc9-LZ: GUY17_07685
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Entry
GUY17_07685 CDS
T10509
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
shea Shewanella sp. Arc9-LZ
Brite
KEGG Orthology (KO) [BR:
shea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shea03032
]
GUY17_07685 (topA)
03400 DNA repair and recombination proteins [BR:
shea03400
]
GUY17_07685 (topA)
Enzymes [BR:
shea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
GUY17_07685 (topA)
DNA replication proteins [BR:
shea03032
]
Prokaryotic type
DNA Topoisomerases
GUY17_07685 (topA)
DNA repair and recombination proteins [BR:
shea03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
GUY17_07685 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_2
DUF2399
Motif
Other DBs
NCBI-ProteinID:
QHS13004
UniProt:
A0AAE6SS33
LinkDB
All DBs
Position
1789705..1792344
Genome browser
AA seq
879 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKDFIVKSSVGHIRDLPTSSTSDGTTVTKTAAEVKKLSP
EEKAKYKLIRDKQALVARMGVNPDKDWAAKYQILPGKEKVVKELKALAETADQIYLATDL
DREGEAIAWHLQEIIGGDPSRYQRVVFNEITKTAIQDAFSKPSVLDTNMVNAQQARRFLD
RVVGFMVSPLLWKKVARGLSAGRVQSVAVRLVVERESEIKAFVPEEFWDIHAELNTPTAA
SLKMQVMKYQSAAFEPINEAQAKVAVDALRDAAYVVTAREDKATSSKPSAPYITSTLQQA
ASTRLSFGVKKTMMMAQRLYEAGHITYMRTDSTNLSKEAVENLREMIGAEFGDKYLPAEP
IRYGSKEGAQEAHEAIRPSNVAVQSASLTDMERDAQRLYELIWRQFVSCQMTPAQYDATR
LTVTAGDYELKASGRTLRFDGWTRVQPQVSKKNEEDKTLPVVAKGDKLVLETLSPKQHFT
KPAPRYSEASLVKELEKRGIGRPSTYATIISTIQDRGYVKVDNRRFFAEKMGEIVSERLV
GSFKELMSYDFTASMEQTLDDVAQGKLDWKKVLDGFYGDFTKQLLLAELDPDEGGMRPNE
MVLTDDIKCPTCGRPMGIRTGSTGVFLGCSGYALPPKERCKTTLNLTPGEEAVSDNEDGE
TEALRAKHRCGKCGTAMDSYLIDETRKLHVCGNNPSCDGYEVEAGQFKIKGYEGPIIECD
RCGNNMELKNGRFGKYFGCTNSECKNTRKLLRSGEAAPPKEDPIFLPELKCTKSDAHFVL
RDGAAGIFLAASTFPKSRETRAPLVEELVQYRDLLWPKYAYLADAPVEDDEGNKASVKFS
RKTKEQYVATEVDGKATGWSSKFIGGKWVSESTKKKAKK
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcgctagttattgtcgaatcgccggccaaagccaagacaattaataaatat
cttggtaaagacttcattgtgaagtcgagtgtaggtcatattcgtgacttaccaacttcg
tctacttctgacggtacaactgtgactaaaaccgcagcagaagttaagaaattatctcct
gaagaaaaagctaaatacaagctgatcagagacaaacaagcgcttgtggcgcgaatgggt
gttaacccagataaagactgggcggctaagtatcaaattctgcctggtaaagaaaaagtt
gttaaagaattaaaagcgttagcagaaactgctgaccaaatatatctcgcaacggatttg
gaccgtgaaggggaagccattgcctggcatttacaggaaattattggtggtgatccttca
cggtatcagcgagttgtgttcaacgaaattactaaaacagcgattcaagatgcgtttagt
aaaccgtcggtacttgataccaatatggttaatgcccagcaagctcgtcgctttttagac
cgtgttgttggctttatggtatcaccattattatggaaaaaagtcgctcgtggtttatct
gctgggcgtgttcagtcggtagcagtgcgcttagttgtagagcgtgaaagtgaaattaaa
gcgtttgttccagaagagttttgggatatccatgctgagttaaatacacctaccgccgct
agcttgaaaatgcaggtgatgaagtatcaatctgctgcatttgaaccgattaatgaagcg
caagctaaagtcgctgtcgatgcgttgcgtgatgcagcatatgttgttactgcgcgtgaa
gataaagcaacctcaagcaaaccttcggcaccttatattacgtcgacattgcagcaagct
gccagtactcgtcttagttttggtgttaagaaaaccatgatgatggcgcagcgtttgtac
gaagctggccatattacgtatatgcgtaccgattcaaccaatttgagtaaagaagcggtt
gaaaacttacgtgaaatgattggtgccgagttcggtgacaagtatttaccggcagaacct
attcgttatggtagcaaagagggcgctcaagaggcgcatgaagctattagaccgtcgaac
gtggctgtgcagtccgcttcgttaaccgatatggaaagagacgctcagcgcttgtatgag
cttatctggcgtcaatttgtgtcatgtcaaatgacacctgctcaatatgatgcaacacgt
ttaacggtaaccgcgggtgattacgaattaaaagccagtggccgtaccttacgttttgat
ggttggactcgtgttcagccacaagtgagtaagaaaaacgaagaagataagacgctacca
gtcgttgcaaaaggtgacaagttagtgcttgaaaccttatctcctaagcaacactttacc
aagcctgcaccgcgttacagtgaagcgtctttggttaaagagcttgagaagcgtggtatt
ggtcgtccttcaacgtatgcgacgattatttcaaccattcaggatcgtggttacgttaaa
gttgataaccgccgtttctttgctgaaaaaatgggtgagattgtcagcgaacgcttagtc
ggcagttttaaagaattaatgagctacgactttaccgccagcatggagcaaacattagat
gatgttgctcaaggtaagctggactggaaaaaagtattagacggtttttatggcgacttt
accaagcagttattgttggccgagttagatcctgatgaaggtggtatgcgccctaatgag
atggtattaacagacgacattaagtgtccaacctgtggccgtccaatgggtattcgtact
ggttcaacaggggtgttcttaggttgttctggttatgcgttgccgcctaaagaacgttgt
aagaccacgctaaacttaaccccaggtgaagaagcggttagcgacaatgaagatggcgaa
acagaagcgttacgtgctaaacatcgatgtggtaagtgtggtaccgcgatggacagttat
ctcattgacgaaacacgtaaattacatgtttgtggtaataacccgtcatgtgatggttac
gaagttgaagccggacaatttaagattaaaggctatgaaggtccaattattgagtgcgat
cgttgcggcaataatatggaacttaaaaacggtcgatttggtaagtattttggttgcacc
aatagcgagtgtaaaaacacccgtaagttgctgagaagcggtgaagcggcgccaccaaaa
gaagatcctatctttctacctgaattaaaatgtactaaatcggatgctcactttgtgctt
cgtgatggtgctgctggtatatttttagccgccagtactttccctaaatcgcgtgaaaca
cgtgcgccgttagtggaagagttagtgcagtatcgcgatttgttatggcctaaatatgcg
tatcttgccgatgcgccagtcgaagatgatgaaggcaataaagcctcggttaaatttagt
cgtaaaaccaaagagcagtatgttgctactgaagttgacggcaaagctaccggttggtct
tctaagtttatcggcggtaaatgggttagtgaatcaactaagaaaaaagctaagaaataa
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