Shewanella sp. H8: ABIS04_02180
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Entry
ABIS04_02180 CDS
T10623
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sheh Shewanella sp. H8
Pathway
sheh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sheh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABIS04_02180 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sheh03021
]
ABIS04_02180 (rho)
03019 Messenger RNA biogenesis [BR:
sheh03019
]
ABIS04_02180 (rho)
Transcription machinery [BR:
sheh03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ABIS04_02180 (rho)
Messenger RNA biogenesis [BR:
sheh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ABIS04_02180 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
NACHT
OB_RNB
ATPase_2
Spore_III_AA
AAA_25
AAA
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
XBJ49016
LinkDB
All DBs
Position
complement(504434..505696)
Genome browser
AA seq
420 aa
AA seq
DB search
MNLTELKDTPISDLVSLAESMNLENMARARKQDIIFSILKAHAKSGEDIFGGGVLEILQD
GFGFLRSSDGSYLAGPDDIYVSPSQIRRFNMRTGDSIFGKIRPPKEGERYFALLKVSEVN
FDKPESSRNKILFENLTPLHAEERLRMERGNGSTEDITARILDLCSPIGKGQRGLIVAPP
KAGKTLLLQNIAQSISHNNPDVVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRF
FGAARNIEHGGSLTIIATALVDTGSKMDEVIYEEFKGTGNQELHLSRKAAEKRVFPAIDF
NRSGTRREEKLTTTDELQKMWILRKILHPMDEVSAMEFLIDKLAMTKTNEEFFTAMKRAK
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaacagaattaaaagacacgccaatttcggatctagtttcgcttgctgaaagt
atgaacctggaaaatatggctcgtgcccgtaaacaagatatcatcttctctattttgaaa
gctcacgctaaaagcggagaagacatcttcggtggcggtgtattagaaatcctccaagac
ggttttggatttttaagaagttcagatggctcatatcttgcgggtcctgacgatatatat
gtttcaccaagccaaatccgccgctttaatatgcgaacgggtgacagcatttttgggaaa
atcaggccacctaaagaaggcgaaagatactttgcactactgaaagtcagtgaagttaac
tttgataaaccagaaagctctcgcaacaaaatcctgtttgaaaacttaaccccactacac
gctgaagaacgtcttcgtatggaacgtggtaacggttcaacagaagacattaccgctcgt
attcttgatttatgctcacctatcggtaaaggtcagcgtggtttgattgtagcgccgcca
aaagcgggtaaaacactattactgcaaaacattgctcaaagtatttcccataacaaccca
gatgtggtgttaatggtattgcttatcgatgaacgtcctgaagaagtaactgaaatgcaa
cgccttgtaaaaggtgaagtgattgcgtctacattcgatgaaccagccagccgtcatgtt
caagtggccgaaatggttatcgaaaaagcaaaacgtttagttgagcacaaaaaagatgtt
gtcattttactcgattcaattactcgtttagcccgtgcctacaacaccgtaatcccttca
tcgggtaaagtgttaactggtggtgttgatgccaacgcattacatcgtcctaagcgcttt
ttcggtgctgcacgtaacattgaacatggtggcagcttaactattattgctacagccttg
gtagatactggctcaaaaatggacgaagttatttacgaagaatttaaaggtactggtaac
caagagttacacctttctcgtaaagcggcagaaaaacgtgtattccctgcgattgatttc
aaccgctctggtactcgtcgtgaagaaaaactaacgacaacagatgagcttcagaagatg
tggattttacgcaaaatcctacatccaatggatgaggtttctgcaatggaattcttaatc
gataaattggcaatgaccaaaactaacgaagaattcttcacggcaatgaaacgcgctaag
taa
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