Shewanella sp. H8: ABIS04_03180
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Entry
ABIS04_03180 CDS
T10623
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sheh Shewanella sp. H8
Pathway
sheh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sheh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABIS04_03180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sheh03019
]
ABIS04_03180
Enzymes [BR:
sheh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ABIS04_03180
Messenger RNA biogenesis [BR:
sheh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABIS04_03180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_19
CMS1
AAA_30
AAA_22
Flavi_DEAD
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
XBJ49205
LinkDB
All DBs
Position
complement(743750..745183)
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AA seq
477 aa
AA seq
DB search
MSFSSLGLNAAILKAVEKQGYDTPSPIQAQAIPAVLAGQDVMAAAQTGTGKTAGFTLPIL
ELLSKGERAQRGQVRALVLTPTRELAAQVQQSVATYGINLPLKSAVVFGGVSIVPQLAAL
RNGVDILVATPGRLLDLCQQKALSFNKLEILVLDEADRMLDMGFIRDIKKVLAMLPAKRQ
NLMFSATFSNEIRELAKGLVNNPVEISVTPRNATANTVTQCVYPLDKTRKSMALIELIKT
NDWKQVLVFSRTKHGANRLAKSLEAAGIKAAAIHGNKSQTARTKALADFKAGAVQVMVAT
DIAARGIDIDQLPYVVNFDLPNVPEDYVHRIGRTGRAGSTGQAVSLVGLEEVKLLHDIER
LINRTIERKQLAGFEAPFTIPEASSRSGGNGAKKPNPNRSKHAQQNANDGAQGDKPARKY
DSRQQSRGSDKPADPKAEARANGNKPPQRNRPPRRSGTAPVTSANSNNPYANAKVKS
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgagtttttcctcacttggtctgaatgctgctattttaaaagcggttgaaaaacaaggt
tacgacaccccatctccaattcaagcacaagcaattccagcggttttagccggtcaagat
gtcatggctgctgcacaaacgggaactgggaagacagccggttttaccctaccaatttta
gaattattatctaaaggcgagcgcgcccaacgtggtcaagtccgtgcattagtgttaacg
cctacacgagaacttgccgcacaggtacaacaaagcgttgccacttacggtatcaactta
ccgttaaaatcagcagtggtatttggtggtgtttctatcgtgccgcaactcgcagcgttg
agaaacggagtcgacattttggtcgccactccaggtcgtttactcgacttatgccagcaa
aaagcacttagcttcaataaattagaaatattagtattagacgaagcagaccgtatgctc
gacatgggttttattcgcgacattaaaaaagtattagcaatgttacctgctaagcgccaa
aacttaatgttttcagcaactttttcaaatgaaattcgtgaacttgctaaagggttagtt
aataatccggtagaaatttcagtcacaccacgtaacgcaacagcaaacactgtgacccaa
tgtgtgtatcctttggataaaacacgtaaatcaatggcactaatcgaactgattaaaacc
aatgattggaaacaagtcttagtgttttctcgtaccaaacatggtgcaaaccgtttagcg
aaaagcttagaagccgctggtatcaaagccgcagccattcatggtaataaaagccaaaca
gcacgaaccaaagcattggccgattttaaagcgggtgcagtacaagtcatggtcgcaacg
gatattgccgcacgcggtatcgacatcgatcaactaccttatgttgttaactttgacttg
cctaacgtacctgaagattatgtgcatcgtattggccgtactggccgtgcaggttcaaca
ggccaagcggtatctctcgttggtctagaagaagttaagttgttacatgatatcgagcgt
ttaattaaccgaaccattgagcgtaaacaactagcggggtttgaagctccgtttactatc
cctgaagcgagtagcagatctggcggcaatggtgctaaaaaaccaaatccgaaccgcagt
aaacatgctcaacagaatgctaacgatggtgctcaaggtgataagccggcacgtaaatat
gactctcgtcagcaatctcgtggaagtgataagccagcagatcctaaggcagaagcgcgt
gcaaatggtaataaaccaccacaacgtaatcgtccaccacgtcgaagtggcactgcgcca
gttacgtcagcaaatagcaataatccttatgctaacgctaaagttaaaagctaa
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