Shewanella sp. H8: ABIS04_04085
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Entry
ABIS04_04085 CDS
T10623
Symbol
ung
Name
(GenBank) uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
sheh Shewanella sp. H8
Pathway
sheh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sheh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ABIS04_04085 (ung)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sheh03400
]
ABIS04_04085 (ung)
Enzymes [BR:
sheh01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
ABIS04_04085 (ung)
DNA repair and recombination proteins [BR:
sheh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
ABIS04_04085 (ung)
Prokaryotic type
ABIS04_04085 (ung)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Spo16_N
Motif
Other DBs
NCBI-ProteinID:
XBJ49369
LinkDB
All DBs
Position
940288..940950
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AA seq
220 aa
AA seq
DB search
MTKHWQEFIQRQQNQVYYQQLQSFITQQRNEGKTIYPPENEVFSAFQLTPLEQVKVVILG
QDPYHGPDQAHGLSFSVKTGIKPPPSLVNIYKELQNDIEGFIVPNHGNLTAWAKQGVLLL
NTVLTVEQGKAHSHAKAGWQAFTDNVLKRLNQQSTPIIFVCWGNYAIKKGQLITASHHHI
LNGPHPSPLSAYRGFFGCGHFSNINQLLLEHGGNPINWQV
NT seq
663 nt
NT seq
+upstream
nt +downstream
nt
atgactaagcattggcaagaatttattcagcgacaacagaaccaagtctattatcagcaa
cttcagtcgtttattacccaacaacgtaatgaggggaaaacgatatacccacctgaaaat
gaggtgttttctgcttttcaattaacaccactagagcaagttaaagtcgtgatattaggc
caagatccatatcatgggccagatcaagctcatgggttatctttttcagtaaaaacaggc
attaaaccaccaccgtcattagttaatatttataaagaattacagaatgatattgaaggg
tttatcgtacccaaccatggtaatttgacggcttgggcaaagcagggcgttttactatta
aatacggtgttaacggttgaacaagggaaagctcattctcatgctaaagcgggttggcaa
gcgtttactgataatgtcttgaaacgattaaatcagcaatcaacgccgattatatttgtg
tgttgggggaattatgcgattaaaaaaggccagctgattacagcatctcatcaccatatt
ctgaatggcccacacccatcgccattatcggcttatcgtggtttttttggttgcggtcat
ttctcaaatataaatcaattattacttgaacatggcggtaaccctatcaattggcaagtg
taa
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