Shewanella sp. H8: ABIS04_04890
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Entry
ABIS04_04890 CDS
T10623
Symbol
ffh
Name
(GenBank) signal recognition particle protein
KO
K03106
signal recognition particle subunit SRP54 [EC:
3.6.5.4
]
Organism
sheh Shewanella sp. H8
Pathway
sheh02024
Quorum sensing
sheh03060
Protein export
sheh03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
sheh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03060 Protein export
ABIS04_04890 (ffh)
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
ABIS04_04890 (ffh)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
ABIS04_04890 (ffh)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
sheh02044
]
ABIS04_04890 (ffh)
Enzymes [BR:
sheh01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.5 Acting on GTP to facilitate cellular and subcellular movement
3.6.5.4 signal-recognition-particle GTPase
ABIS04_04890 (ffh)
Secretion system [BR:
sheh02044
]
Sec (secretion) system
Prokaryotic Sec-SRP core components
ABIS04_04890 (ffh)
Eukaryotic Sec-SRP protein
ABIS04_04890 (ffh)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SRP54
SRP_SPB
SRP54_N
CbiA
AAA_22
Zeta_toxin
cobW
AAA_24
AAA_33
AAA_30
YqeC
AAA_26
AAA_14
Helicase_RecD
AAA_31
APS_kinase
Mg_chelatase
AAA_16
Motif
Other DBs
NCBI-ProteinID:
XBJ49517
LinkDB
All DBs
Position
1115560..1116933
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AA seq
457 aa
AA seq
DB search
MFENLSDRLSRTLKNISGRGRLTEDNVKETLREVRMALLEADVALPVVRDFVNSVKERAV
GQEVSKSLSPGQAFIKIVQSELERAMGEANEALDLAAIPPAVIMMAGLQGAGKTTSVAKL
GKFLRTRHKKSVLVVSADVYRPAAIKQLETLAEEVEVEFFPSDVSQKPVDIAKAAISYAK
LKFIDVVIVDTAGRLHVDEAMMDEIKQLHATVNPVETLFVVDAMTGQDAANTAKAFNEAL
PLTGVILTKVDGDARGGAALSIRSITGKPIKFLGVGEKTDALEPFHPDRIASRILGMGDV
LSLIEEVERGVDKDKAMKLASKVKSGGSFDLEDFREQLQQMKNMGGMMNMIEKLPGVGQL
PPEALAQVQDGKMTGQMEAIINSMTSKERKNPDVIKGSRKRRIAVGSGTQIQDVNRLLKQ
FTQMQKMMKKMSGKGGMKKMMRGMGGMLPPGMKFPGR
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaaatttatctgacagactgtcacgcacattaaaaaacattagtggccgtggt
cgcttaacagaagacaacgttaaagaaacccttcgtgaagtgcgtatggcactgcttgaa
gcggatgtcgctttacctgttgttagagacttcgttaacagcgtaaaagaacgcgctgtg
ggtcaagaagtgtcaaaaagcttaagcccagggcaagcttttattaaaattgttcaaagc
gaacttgaaagagccatgggtgaggcgaatgaagccctcgacttagcggctattcctcct
gccgttattatgatggcgggtcttcaaggtgcgggtaaaacaacctcagtagcaaaatta
ggtaaatttttacgtacacgtcataaaaaatccgttctggtggtcagcgctgacgtttat
cgccctgcagcgattaaacagcttgaaacactagcagaagaagtcgaagtcgagttcttt
ccatctgacgtgagccaaaagccggtagatattgctaaagcagcaataagctatgcaaaa
ttaaaattcattgatgtggtcattgttgatacagcaggtcgtctgcatgttgatgaagcc
atgatggatgaaatcaaacagctgcatgccactgttaatcctgttgagaccttgtttgtt
gttgatgcgatgacaggtcaagatgccgctaatacagctaaagcatttaatgaagcgtta
ccattaacgggtgttattttaacaaaagtcgatggtgatgctcgtggtggtgcggcgtta
tctattcgtagtattacgggtaaaccaattaaattcttaggtgttggtgaaaaaaccgat
gcattagaaccgttccatccagaccgtattgcgtcacgcattttaggtatgggtgacgtg
ttatcattaattgaagaagttgaacgtggcgtcgataaagacaaagcgatgaaactggct
tcaaaagttaagtcaggtggcagtttcgaccttgaagattttcgtgagcaattacagcaa
atgaaaaacatgggcgggatgatgaacatgattgagaaacttccgggtgtaggacaatta
ccaccagaagcattagctcaagttcaagatggtaaaatgactggtcagatggaagccatt
attaattcgatgacatctaaagaacgcaaaaatccagatgtcattaaaggttctcgtaaa
cgtcgaatcgctgtcggttctggcactcaaattcaagatgttaaccgtttattgaagcaa
ttcacccaaatgcagaaaatgatgaaaaagatgtctggtaagggtggaatgaagaaaatg
atgcgtggaatgggcggaatgttacctccagggatgaagtttcctggtagataa
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