Shewanella sp. H8: ABIS04_05555
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Entry
ABIS04_05555 CDS
T10623
Symbol
xseB
Name
(GenBank) exodeoxyribonuclease VII small subunit
KO
K03602
exodeoxyribonuclease VII small subunit [EC:
3.1.11.6
]
Organism
sheh Shewanella sp. H8
Pathway
sheh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sheh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
ABIS04_05555 (xseB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sheh03400
]
ABIS04_05555 (xseB)
Enzymes [BR:
sheh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
ABIS04_05555 (xseB)
DNA repair and recombination proteins [BR:
sheh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
ABIS04_05555 (xseB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_S
KxDL
TACC_C
DASH_Dad2
SlyX
DUF6687
DUF6730
Vps53_N
Motif
Other DBs
NCBI-ProteinID:
XBJ49643
LinkDB
All DBs
Position
complement(1272168..1272404)
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AA seq
78 aa
AA seq
DB search
MAKKPENLSFEQSLTELETIVAHLEQGEVSLDDALKQFERGIKLVRQSQAKLEQAQQKVS
ILLNEDDAELAPFTVESE
NT seq
237 nt
NT seq
+upstream
nt +downstream
nt
gtggctaaaaaaccagaaaacctcagttttgaacaatcattaactgaacttgaaaccatt
gttgctcatttagagcaaggtgaagtctcgctagatgatgcacttaaacaatttgagcga
ggcattaaattagtgcgacaaagccaagccaaacttgagcaagcacagcaaaaagtctct
atcttattaaatgaagatgatgctgaattagcgccgttcactgttgaaagtgaataa
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