Shewanella sp. H8: ABIS04_06850
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Entry
ABIS04_06850 CDS
T10623
Symbol
recC
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
sheh Shewanella sp. H8
Pathway
sheh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sheh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
ABIS04_06850 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sheh03400
]
ABIS04_06850 (recC)
Enzymes [BR:
sheh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
ABIS04_06850 (recC)
DNA repair and recombination proteins [BR:
sheh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ABIS04_06850 (recC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
XBJ49861
LinkDB
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Position
complement(1558181..1561972)
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AA seq
1263 aa
AA seq
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MLTLIQSNQMEVLSEQLAKLLAIRLDNVSLLASEHVLVQSPGMSTWLRLEIAKHNGIAAA
LSFPLPSSFTWQLCHDLLPNVPKDNAFTKAAMTWKLMDLLPSLLDDPDFSPLKQYLSPQV
DDTLDPSTDNANANVEDKLELEVKVDQASVKNLLPLNQSLDPSHDAIKLFQLCGRIADIF
DQYLVYRPEWILAWEQNQPLSSLDNRLALDENQQWQPILWRALIDYNQHHLHASHYHRAN
LHADLIATLANPDTDLSMLPARLYVFGISSMPPQTLDVLYHLASRIDVIMLSLSPCQHYW
GDIVEPKTRARMALQYANKKQLDQDWEDKLEVGNPILANNGQMGRELLDLLLSLPPEHTD
FGYDCYVEPEPNNLLHGVQFDILQMETLGQPLGPNADLYQDIHARRTLLPNDDSITLRSC
HSALREVETLHDHLLELLSNNSDLSPKDIVIMMPDVAAYAPYIDAVFGTANSQYFADKNP
QKGDYYIPYAIADRGAAQESPLINSFLSLLNINQSRFGLTDIIGILEVPAILRRFQLDDD
ELSLIRGWLDDANVRWGRSEQTRSQLGVQPFTQNSWAFGIKRLILGYAFNDDADIYRDTL
MVQGIEGQSSQALGKLLNFLETIDTYFALFASDYSTSERLEQLQQFLVDCYDTDDDEREQ
IQAIRDALVTLDTELESAGHQGQVNIEVLKQWFNQRLTESRVGQRYLAGSVNFCTLMPMR
SIPFKVVCLLGMNDGVYPRVQHPVGFDLMAHFGPKKGDRSRRLDDRYLFLEALLSAREQL
YISYIGHSERDNAERIASMLVSELVEYCQLSYLPQSLQQQLEQQADINLDDADKAVLAQL
IQAQPLQPFDAKLFRDTPPSASGLGKLQHSFNAQWCPPPANATINNHFFEQALPLSAEQA
DEVFAHTQVNSDGQKVVELELSSLIRFYRNPAQFFFNRSLKVDLSLNIQADDNDEPFSLN
ALERYLLQSRMLDNAIEHQLDGPDLELLSKLKTSGELPMAPFDDLLINQYLRDISPLINR
VQFLQDQQAMHTLNVDLNFDLPAHVLSVQGLPAQADPTQSSTVRVNLVGRIDDILPKGLV
NYRPGTAHGRDFIRVYLRHLCIHAMANSSSSGLGKNQFSYLLDIGHFHAFAPITAEQAKA
QLMRFISGFIQGQAQPLCFMPKTAFAYVEADGDHNEKLLKAEQKWDDGQNQFGEGHDPHN
QRLFHFPDDFSEANFGALANHLLQPMLSLYHKEKLAELDTFVTDTAVDIQAQLIASAAQQ
GAQ
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atgcttactttaattcaatctaatcagatggaagtgttatctgaacaattggccaaacta
ttggcaattcgtttagataacgtcagtttattagccagtgagcatgtgttagtacaaagc
ccgggaatgtcgacgtggcttcgcttagagatagccaaacacaatggtatcgccgctgca
ttatcgttcccgctaccctcaagttttacctggcagttatgccatgacctgctgcccaat
gtgccaaaagataacgcctttaccaaagccgcgatgacctggaaattaatggatttattg
cccagcttattagatgaccccgattttagtccgttaaagcaatacttatcaccccaagta
gatgacaccctagatccatcaactgataatgctaatgccaatgttgaggataagcttgag
cttgaggttaaagtagatcaagccagcgtaaaaaacctattgccactcaaccagtcgctt
gacccatcacatgatgccattaagctatttcaattatgtggccgcattgccgatattttc
gatcaatacttagtctatcgccctgaatggattttagcctgggagcaaaaccagccatta
tcgagcctagataatcgcctcgcattagatgaaaaccagcaatggcaacctattctgtgg
cgagcattaatcgactataaccaacatcatttgcacgccagccattatcatcgcgctaat
ttacatgccgacttaattgcgaccctagctaatccagacaccgatttatccatgttaccc
gctcggttatacgtgtttggtatttcatccatgccgccgcaaaccctcgatgtgctttac
catttagccagccgtattgatgtgattatgttgtcgctcagcccctgccagcactattgg
ggcgatatcgttgagccgaaaacccgcgcccgcatggcgttgcaatatgccaataaaaaa
caactcgaccaagactgggaagacaagctagaagtgggtaacccgatattggccaataat
ggtcaaatgggccgtgagttactggatttactcctctctttaccgccagaacacactgac
tttggttacgattgttatgttgaacccgaaccaaacaatctactgcacggggtgcaattc
gatatcctgcaaatggaaaccctcggtcaacctttggggccaaatgcagatttataccaa
gatattcatgcgcgccgtacgctattacccaatgatgactcgataactttacgcagttgc
cacagtgccctgcgcgaagtggaaaccttacatgatcaccttttagagctgttatcaaac
aacagcgacttaagccctaaagacatcgtgatcatgatgcccgatgtcgcagcgtatgct
ccgtatattgatgcggtatttggcacagccaacagtcagtattttgccgacaaaaatccg
caaaaaggcgactattatattccctacgctattgccgacagaggcgcggcgcaagaatca
ccgttaattaatagctttttaagcttgttaaacatcaatcaaagccgctttggtctaaca
gatattattggtattttagaagtgccggcaattttgcgccgctttcaactcgatgatgac
gagctatcattaatccgcggctggttagatgacgccaatgtgcgttggggccgcagcgaa
caaacccgtagccagttaggcgtgcaaccttttacgcaaaactcatgggcatttggcatt
aaacgtttaatactcggctacgcctttaacgacgacgccgacatttatcgcgacacctta
atggtgcaaggtattgaaggtcagtcatcgcaggcattaggaaaactactcaacttttta
gaaaccatcgacacttattttgcactattcgccagcgactacagcaccagcgaacgcctt
gaacaattacaacagtttttagtcgattgctacgacaccgacgatgatgaacgcgaacag
atccaagccattcgcgatgctttagtcaccctagacacagaacttgaaagtgccggccat
caaggccaggttaatatagaagtgttaaaacagtggtttaatcaacgcttaactgaatct
cgtgtcggccaacgataccttgctggcagcgtcaacttttgtacattaatgccaatgcgc
tctatcccttttaaagtggtgtgtttactgggcatgaatgacggtgtttatccgcgggta
caacatccggttggatttgatttaatggcgcactttggccctaaaaaaggtgaccgttca
cgccgattagacgaccgctatttatttttagaagcgttattatcagccagagagcaactg
tacatcagttatattggtcacagtgaacgcgataacgctgaacgtatagcgtcaatgtta
gtctctgaattagtggaatattgtcaactcagttacctaccacaatccttacagcaacag
cttgaacaacaagctgacatcaatcttgatgacgccgataaagccgtactagcgcagctt
atacaagcacagcccttgcagccttttgacgctaaattatttcgcgacacaccgccatct
gccagtggcttaggtaaattacaacacagttttaatgcccaatggtgcccgccgccagca
aacgcgaccattaacaatcacttttttgagcaagcattacctttatcggccgaacaagca
gatgaagtctttgctcacactcaagtgaatagtgacggacaaaaagtggtcgagcttgag
ttatcgtcattaatccgtttttatcgtaatccggcgcaattctttttcaaccgaagctta
aaggtcgatttatcgctcaatattcaagccgatgacaacgacgaaccttttagcttaaat
gcactcgagcgctatttactgcaatcacgcatgctcgacaatgccattgagcatcaactc
gacggtccagatctcgaattacttagtaagctcaaaaccagcggtgaattacccatggca
ccgtttgacgacttgttaattaatcaatatttacgcgatatatcgccgttgattaatcga
gtgcaatttttacaagaccaacaagccatgcacacgctgaatgttgatcttaactttgat
ctacctgcgcatgttctatctgtgcagggtttaccagcacaagcagatccaacccaatcg
tccacagtgcgagtcaatcttgtcggccgtattgatgatattttacctaaaggcttagtc
aactaccgcccgggcactgcccacggacgagattttattcgggtatacctacgccactta
tgtattcatgccatggctaattcatctagctcaggcttaggtaaaaatcaatttagttac
ctactcgacattggtcattttcatgcctttgcgccaataacggccgagcaagccaaggcg
cagctaatgcgctttatcagtggttttattcaaggccaagcgcaacctttgtgttttatg
cctaaaaccgctttcgcctatgttgaagcagatggcgaccataacgagaaattgctcaaa
gccgaacaaaaatgggatgacggccaaaaccaattcggtgaaggtcacgacccgcataac
caacgtttatttcattttccagacgactttagcgaagccaactttggtgcattagccaac
catttactgcaacccatgttaagcctgtatcacaaagaaaaactggcagaattagacacc
tttgtcaccgacactgcggtagacattcaagcgcaactcattgccagcgctgcacaacaa
ggagcgcaataa
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