Shewanella sp. H8: ABIS04_07015
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Entry
ABIS04_07015 CDS
T10623
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sheh Shewanella sp. H8
Brite
KEGG Orthology (KO) [BR:
sheh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sheh03032
]
ABIS04_07015 (topA)
03400 DNA repair and recombination proteins [BR:
sheh03400
]
ABIS04_07015 (topA)
Enzymes [BR:
sheh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
ABIS04_07015 (topA)
DNA replication proteins [BR:
sheh03032
]
Prokaryotic type
DNA Topoisomerases
ABIS04_07015 (topA)
DNA repair and recombination proteins [BR:
sheh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
ABIS04_07015 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_2
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
XBJ49892
LinkDB
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Position
1604108..1606744
Genome browser
AA seq
878 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKDFIVKSSVGHIRDLPTSSTSDGTTATKTAAEVKKLSP
EEKAKYKLIRNKQALVARMGVNPDKGWAAKYQILPGKEKVVKELKALAETADHIYLATDL
DREGEAIAWHLQEIIGGDASRYQRVVFNEITKTAIQEAFSKPSVLDTNMVNAQQARRFLD
RVVGFMVSPLLWKKVARGLSAGRVQSVAVRLVVERESEIKAFVPEEFWDIHAELNTPTAA
TLKMQVMKFQSAAFEPINEAQAQVAVDALQNAKFVVTAREDKATSSKPSAPYITSTLQQA
ASTRLGFGVKKTMMMAQRLYEAGHITYMRTDSTNLSKEAVENLREMIASEFGEKYLPADP
IRYGSKQGAQEAHEAIRPSNVGVQSASLTDMERDAQRLYELIWRQFVSCQMTPAQYDATR
LTVTAGEYELKASGRTLRFDGWTRVQPPMSKKNEEDKTLPVVEKGDKLVLDELLSKQHFT
KPPARYSEASLVKELEKRGIGRPSTYATIISTIQDRGYVRVDNRRFFAEKMGEIVSERLV
DSFKDLMSYDFTASMEQTLDDVAQGKLDWKKVLDGFYGDFTKQLLLAELDPDEGGMRPNE
MVLTDIKCPTCGRPMGIRTGSTGVFLGCSGYALPPKERCKTTLNLTPGEEAVGDNEDGET
EALRAKHRCPKCGTAMDSYLIDETRKLHVCGNNPSCDGYEVEAGHFKIKGYEGPIIECDR
CGNNMELKNGRFGKYFGCTNSECKNTRKLLRSGEAAPPKEDPIFLPELKCTKSDAHFVLR
DGAAGIFLAASTFPKSRETRAPLVEELVQYRDLLWPKYKFLADAPVEDDEGNKAQVKFSR
KTKEQYVATEVDGKATGWSSKFIGGKWVSESTKKKAKK
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcgctagttattgtcgaatcgccggccaaagccaagacaattaataaatat
cttggcaaagacttcattgtgaagtcgagtgtaggtcacattcgtgacttaccaacttcg
tctacttctgatggcaccactgcgactaaaaccgctgcagaagtaaaaaaattatcgcct
gaagaaaaagctaaatataagctgatcagaaacaagcaagcgcttgtagcgcgcatgggt
gtgaacccagataaaggctgggcagccaagtatcaaatactgcctggtaaagagaaagtg
gttaaagaattaaaagcgttagcagaaactgctgaccatatctatctcgcaacggatttg
gaccgtgaaggggaagccattgcctggcatttacaggaaattattggtggcgacgcttca
cggtatcaacgtgtggtattcaacgaaattactaaaacagcaattcaagaagcattcagc
aaaccatcggtacttgatactaatatggttaatgctcagcaagcacgtcgctttttagac
cgtgttgttggctttatggtgtcaccattattatggaaaaaagtcgctcgtggtttatcg
gctggacgtgttcaatcggttgctgttcgccttgtagtcgaacgtgagagtgaaattaaa
gcttttgttccagaagagttttgggatatccatgctgaattaaataccccaacggctgcc
acgttaaaaatgcaggtgatgaaatttcaatcggctgcatttgaaccgataaatgaagcg
caagcacaagtggcggtggatgcattacaaaatgctaaatttgtcgttactgcacgtgaa
gataaagccacgtcaagcaagccatcagcgccttatattacctctacattgcaacaagcg
gccagtacacgtcttggtttcggggtaaagaaaaccatgatgatggctcaacgcttgtac
gaagcgggccatattacgtatatgcgtactgactcaactaatttgagtaaagaagcggtc
gaaaacttacgtgaaatgatagcttctgagtttggtgaaaagtatttaccggcagatcct
attcgttatggaagtaaacagggcgctcaagaggcgcatgaagcgattagaccgtcaaac
gttggtgttcagtcagcatcactaaccgacatggaaagagatgctcagcgcttgtatgag
ctcatttggcgtcaatttgtatcttgtcagatgacacctgcacagtatgacgcaacacgt
ttaactgtgacagcgggtgaatatgaactaaaagcatcaggtcgtacattacgttttgat
ggttggacgcgtgttcaaccaccgatgagtaagaaaaacgaagaagataagacactgcca
gttgttgagaaaggcgataagcttgttcttgatgaattattatcgaaacagcattttacg
aaaccgccagcgagatatagcgaagcgtctttagtgaaagagcttgaaaaacgtggtatt
ggacgtccatcaacctatgcgactattatttcaactattcaagatcgtggctatgtcaga
gttgataatcgccgtttctttgctgaaaaaatgggtgagattgttagcgaacgtttagtt
gacagtttcaaagacctaatgagttacgactttaccgccagcatggagcaaacattagat
gatgttgcccaaggaaagttggactggaaaaaagtgttagatggtttttatggtgatttt
accaaacaactattgttagctgaattagatccagatgaaggtggtatgcgccctaatgag
atggtgctaacagacattaagtgtccaacttgtggccgcccaatggggattagaacgggt
tcaactggggtattccttggttgctctggttatgctttgccaccaaaagaacgttgtaaa
actacgcttaacctaaccccaggtgaagaagctgttggtgacaatgaagacggtgaaact
gaagcactacgtgctaaacatcgttgtccaaagtgcggcaccgcaatggacagttatctc
attgacgagacacgtaaattacatgtttgtggtaataacccttcatgtgatggctacgaa
gtagaagctggacattttaagattaaaggttatgaaggaccgattattgagtgcgatcgt
tgcggcaataatatggaacttaaaaacggtcgatttggtaagtattttggttgtaccaat
agcgaatgtaaaaatactcgcaagttgttacgaagtggcgaagctgcgccaccaaaagaa
gaccctatttttctaccagaattgaaatgtacaaaatcggatgcccactttgtgctccgt
gatggtgctgctggaatatttttagcggccagtactttccctaaatcacgagaaactcgt
gcgcctttagtagaagaattagttcagtatcgtgatttgttatggcctaaatataagttt
cttgctgatgcaccggtggaagacgatgaaggtaataaagctcaggttaaatttagccgt
aaaactaaagagcagtatgttgctactgaggttgacggcaaagccactggctggtcttcg
aaatttataggcggtaaatgggtaagtgaatcaactaagaaaaaagctaaaaaataa
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