Shewanella sp. H8: ABIS04_07945
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Entry
ABIS04_07945 CDS
T10623
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
sheh Shewanella sp. H8
Pathway
sheh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sheh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
ABIS04_07945 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sheh03400
]
ABIS04_07945 (sbcB)
Enzymes [BR:
sheh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
ABIS04_07945 (sbcB)
DNA repair and recombination proteins [BR:
sheh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
ABIS04_07945 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ABIS04_07945 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ABIS04_07945 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
EF-hand_14
Motif
Other DBs
NCBI-ProteinID:
XBJ50053
LinkDB
All DBs
Position
complement(1826318..1827733)
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AA seq
471 aa
AA seq
DB search
MTNAIQPTLFWHDYETFGAIPSKDRPSQFAGIRTDLELNILGEPETFYCKLAPDYLPSPE
AILITGITPQLANLKGVPEAEFMKRINTLFSQPNTCVVGYNSLRFDDEVSRYGFYRNFID
PYAREWQNGNSRWDIIDLVRACYAFRPDGINWPLKEDGSPSFKLELLTQANGLSHEKAHD
AMSDVYATIAMAKLIKQKQPKLYEYYFNLRRKQAVADHIDVLKMQPLVHVSSKISALQGC
TTLIAPVAYHPTNKNAVICVNLAMDISPLLELSAQEISDRMYTSRQNLAENELAIPLKQI
HLNKCPFIGSPKLLDDEVAVKLQFDKAFAREQYKRLKNHPELREKLNQVFELESDRKPIT
DPDLMLYSGGFFSHADKAKMDIICHTAPHNLAALALQFDDPRINEMLFRFRARNYPETLS
DNEARKWREFCQQRLSDPDYVIKLENLVEETSENEHKQKLLKALYQYLQSL
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgactaacgcaattcagccaacattattttggcacgattacgaaacatttggggcaatt
ccaagtaaagatcgtccatcacagtttgcgggtattcgaaccgatcttgaacttaatatt
ctcggcgaacctgaaaccttttattgcaaactcgcacccgactacttaccgtctcctgaa
gctattttaattacaggtattaccccgcaactggctaatcttaaaggcgtgccagaggct
gagttcatgaaacgtatcaatacgttattcagccaacccaatacctgcgtagtcggctat
aactcattacgttttgatgatgaagtgagtcgttacggcttttaccgtaattttattgat
ccatacgctcgagaatggcaaaacggtaattcacgttgggatattatcgatttggttaga
gcttgttatgcatttcgtccagacgggattaattggccattaaaagaagatggttcaccc
agttttaaattggaattattgacccaagcgaatggtttaagtcatgaaaaagcccatgat
gcgatgtcagatgtatatgcaaccattgctatggctaaattgataaagcaaaaacaaccc
aaactatacgaatactatttcaatttaagacgtaaacaagcggttgcggaccatattgat
gtattaaaaatgcaacccttggttcatgtcagctcaaaaattagtgcattacaaggttgt
actacgttaatcgcgcctgttgcataccatccgactaataaaaacgcggttatttgcgtt
aatttggccatggatatctcgccattgttggaattgtcagctcaagaaataagcgaccgc
atgtacacgtctcgtcaaaacttagccgaaaacgagcttgctattccattaaaacaaatc
catctcaataaatgtccattcattggttcgccaaaattacttgacgacgaagtggctgta
aaattacagtttgataaagcatttgcgcgtgaacaatataaacgcttaaaaaaccatccc
gaattgcgtgaaaagcttaaccaagtgtttgaacttgaatcagatcgtaaacccattacg
gatccagatttaatgctttatagcgggggatttttcagccatgccgataaagctaaaatg
gatataatttgccacacggcaccacacaatttagcggcattagcattacaattcgatgat
ccgcggatcaatgaaatgttgtttcgtttccgggctcgtaactacccagaaacattaagc
gacaatgaggcacgcaaatggcgtgaattctgccaacaacgattatcagatcccgattat
gtgataaaactcgagaacttggtcgaagaaaccagcgagaatgaacataaacaaaagcta
ttaaaagccctatatcaatacttacagtcattatag
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