Shewanella sp. H8: ABIS04_09280
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Entry
ABIS04_09280 CDS
T10623
Name
(GenBank) AMP-binding protein
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
sheh Shewanella sp. H8
Pathway
sheh00061
Fatty acid biosynthesis
sheh00071
Fatty acid degradation
sheh01100
Metabolic pathways
sheh01212
Fatty acid metabolism
sheh02024
Quorum sensing
sheh04146
Peroxisome
Module
sheh_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
sheh00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
ABIS04_09280
00071 Fatty acid degradation
ABIS04_09280
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
ABIS04_09280
09145 Cellular community - prokaryotes
02024 Quorum sensing
ABIS04_09280
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
sheh01004
]
ABIS04_09280
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sheh04147
]
ABIS04_09280
Enzymes [BR:
sheh01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
ABIS04_09280
Lipid biosynthesis proteins [BR:
sheh01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
ABIS04_09280
Exosome [BR:
sheh04147
]
Exosomal proteins
Exosomal proteins of breast milk
ABIS04_09280
Exosomal proteins of breast cancer cells
ABIS04_09280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
AMP-binding_C_2
Motif
Other DBs
NCBI-ProteinID:
XBJ50305
LinkDB
All DBs
Position
2144010..2145674
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AA seq
554 aa
AA seq
DB search
MERIWLEKSYPPGVEFEIDPDKYNSLADLFLKYTKLYADNTAFINMDVSITYQQLAQQAT
DFAAYLQQDLGLVKGDKFAIMIPNTLQYPIALFGALIAGLTVVNVNPLYTPRELEHQLKD
SGTKAILILENFAHVLQAVIDKTDVKHVITTGVGDRLGLIKGALVNGAIKHVKKLVPAFD
LPNAVKFNDAMAKGSKKTFIPVDVIGSDLAFLQYTGGTTGPSKGAMLTHRNMVANLEQSN
AVTKNVYEIGKELIITALPLYHIYALTSNCLAFLPFGGTNLLITNPRDMPAFVKELAKYR
FTVITGVNTLFNGLLNTPGFDQLDFSSLKMGFGGGMSVQRPVAEHWERVTKSRLLEGYGL
TECAPLVTMSPYNQKSYNGSIGLPASSTDIRLVGADGEDVALGEPGEMWVKGPQVMKGYY
NRQKATDEVLIDGWLATGDIATMDENGFFKIVDRKKDMINVSGFNVFPNEIEEVIVSHEG
VLEAAAVGVSCDITGERVKVYIVRKDPTLTEQDIFDHCNQMLTNYKRPKVIEFMNELPKS
NVGKVLRKDLRSKA
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atggaaaggatttggctagaaaagagttatccgcctggggttgagtttgaaatcgatcca
gataaatacaactcattggcagatttgtttttaaaatataccaagctatatgccgataat
acggcgtttatcaacatggatgtcagtattacttatcaacagcttgcccagcaagcgaca
gactttgcagcctatttacagcaagacttaggtttagttaaaggcgataagtttgccatt
atgatccccaatacactgcaatatcctatcgcattatttggtgcacttatcgcaggctta
acggtggtgaatgttaatccactgtataccccgcgtgaattagaacatcaattaaaagac
tctggcactaaagccattttaattttagaaaactttgcccatgtattgcaggcagttatt
gataaaaccgatgttaaacatgttatcaccactggtgtgggtgaccgattaggcctaatt
aaaggcgcattagttaacggcgcgattaagcacgtgaagaaattggtgccagcgttcgat
ttacctaatgcggttaaatttaatgacgccatggcaaaaggcagtaaaaaaacctttata
ccggttgatgttatcggttctgacttagcctttttacaatacactggcggcactacaggc
ccttcaaaaggtgccatgctgactcatcgtaatatggttgccaacctagaacagtccaat
gcagtaaccaagaacgtttatgaaatcggcaaagagctgattatcactgcattgccgctt
tatcatatttacgcgttaacctctaattgcttagccttcttaccgtttggtggcaccaac
ttattaatcaccaatccgagagacatgcctgcttttgtaaaagaactggctaaatatcgc
tttactgtcattacgggtgtcaacaccttatttaacggcttattgaatacgccagggttt
gatcaacttgattttagttcattaaaaatgggttttggcggcggaatgtcggtgcaaagg
ccagttgcagaacattgggagcgagtgactaaaagccgtttacttgaaggctacgggtta
acagaatgtgcgcccttagtgacaatgagtccttataaccaaaaaagctacaacggctcg
attggtttaccggcatcatcaaccgatattcgtttagtcggtgcagatggtgaagacgtg
gcattaggtgagcctggtgaaatgtgggttaaaggcccacaagtgatgaaaggctattac
aatcgccaaaaagccactgacgaagtgttaatcgacggctggttagccacgggtgacatt
gccaccatggacgagaatggtttctttaaaattgttgaccgcaaaaaagacatgattaac
gtgtctggttttaacgttttccctaacgaaattgaagaagtgattgtgtcgcacgaaggg
gtgttggaagccgcagctgttggtgtgtcttgcgatattacaggcgagcgagtcaaagtc
tatattgttcgcaaagatcctacattaactgaacaggatatatttgatcattgtaatcaa
atgctcactaattataaacgccctaaagtcattgaatttatgaatgaattacctaagagc
aatgtgggtaaagtattacgtaaagatcttcgtagtaaagcctaa
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