Shewanella sp. H8: ABIS04_11275
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Entry
ABIS04_11275 CDS
T10623
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sheh Shewanella sp. H8
Pathway
sheh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sheh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ABIS04_11275 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sheh03400
]
ABIS04_11275 (mfd)
Enzymes [BR:
sheh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABIS04_11275 (mfd)
DNA repair and recombination proteins [BR:
sheh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ABIS04_11275 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_30
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
XBJ47088
LinkDB
All DBs
Position
2603958..2607485
Genome browser
AA seq
1175 aa
AA seq
DB search
MNLFSVLTPPSVKKGQQTQTLATLGGVSQAITLANLINNHPGTSIIVTHDTPSALSLEVE
LSYLLNHINVNVCLFPDRETLPYDSFSPHQDLISQRLETLANISQSQHNVVIVPVNTLMV
RLPPKSFMTANVMVLKKGDTYGLQQARQHLTDTGYHLVDQVYEHGEFAIRGSIIDIFPTG
SRQPLRIELFDDEVESIRYFDVDTQRSGMARDTIRMLPAKEFPTDNHAIEGFRQRYRRRF
EVISKEAESVYQLVSRNLMPAGIENYLPLFFDETATLFDYLPQNSQLITIGNIEKASLAH
LHEINVRYEDRRVDPLRPLLAPKELYLLNDELFAAFKSYNRTQLLQQHIATDTNNAGEPL
AEVALPTHALIANVEKLPDINANHKLKQPLIALEEYSQKHPQLLFSAESEGRREALLDLF
AKIGIKPKLFEHLSDYLATKDNIGLIVSPLARGCVLTDTAKGAVSIICETELFGQRISQQ
RRREKQKQVSSDVLVKNLAELKVGQPIVHLEHGVALYQGLETLDTGGLVAEYLKLEYAGG
DKLYVPVSSLHLISRFNASGDGDAHLNKLGNETWAKAKKKAIERIRDVAAELLDVYARRQ
ARPGEAMNIDEQEYAQFSQGFPFEETVDQESAIHAVLEDMQAPTAMDRLVCGDVGFGKTE
VAMRAAFVAVNAGKQVVVLVPTTLLAQQHYENFKDRFADWPIVIEVMSRFRTTKEQTGVV
QQLSEGKVDIVIGTHKLLSSEANFDNLGLLVIDEEHRFGVRQKEKIKALRANVDILTLTA
TPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVREYDKATAREAILREILRGGQVYYLH
NNVETIEKTAQNIRELIPEARVITAHGQMRERDLEKVMSDFYHQRFNVLVCTTIIETGID
VPSANTIIIDRADMFGLAQLHQLRGRVGRSHHQAYAYMMTPHPKRMTADARKRLAAIDAL
EDLGAGFLLATQDLEIRGAGELLGDEQSGHISKIGFSLYMEMLESAVKALKEGKEPSLAY
MMSAKAEIDLRIPALLPEDYVSDVNMRLSLYKRIANCETEAMLDELKVEFIDRFGMLPTP
TRNLMAITLYKHQATALGIVKIEMHAKGGSVEFGQENHVDPMFIIGLLQNQPQIYRMDGP
NKLKFNIPAETSKERLELINTLLEQFAKHQILETK
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgaacctatttagtgtactcacgccgccgagtgtaaaaaaaggccaacaaacacaaact
ttggcaaccttaggtggggtctcacaagccatcaccctagccaatttaattaataaccat
cctggcaccagtattattgtcacccatgacacgcccagtgccttgtcacttgaggtcgag
ctgagttatttattaaatcacatcaatgtgaatgtgtgcctgtttcccgaccgtgaaacc
ctgccctacgatagcttctcgccacatcaagacctgatttcccaacgactggaaacctta
gctaatattagccaaagccaacataatgtggtgattgtgcccgtaaacaccttaatggtt
cgtttgccgccaaaatcatttatgaccgctaacgttatggtgttaaaaaaaggcgacacc
tacggattgcaacaagctaggcaacaccttacagacacgggttatcatttagttgatcaa
gtatacgaacacggtgagtttgctattcgtggctctattattgatatttttccgacagga
tctagacaacctttacgcatagagttatttgatgacgaagtcgaatcaatccgttatttt
gatgttgatactcagcgttcaggtatggcccgtgacactattaggatgttgccagcaaaa
gaattcccaaccgacaaccatgctattgaaggctttagacaacgttatcgtcgtcgcttt
gaagtgatctcaaaagaggcagaatcggtttatcaactcgtcagccgtaacttaatgcct
gcaggcattgaaaactacttaccgctgtttttcgatgaaaccgccacgctgtttgattac
ttgccacaaaacagtcaactcatcaccataggcaatattgaaaaagccagcttagcccac
ttgcatgaaattaatgtgcgctacgaagatcgacgagtcgatcctctgcgcccattactg
gcgccgaaagaactttatctgctcaatgatgaattatttgcggcatttaaatcttacaat
cgaacccagttattacagcaacatattgctaccgacaccaataatgccggtgaaccgtta
gccgaagtcgcactaccaacacatgcccttattgctaatgttgaaaagttgcccgatatc
aatgctaatcacaaactcaaacaacctcttatagcattagaagaatacagtcaaaaacat
ccacaactactgttcagtgctgaatctgaaggccgccgtgaagccttattagacttattt
gcaaaaattggcattaaacccaaactgtttgagcacctaagcgactacctagcaaccaaa
gacaatatcggtttaatcgtgtcacctttagcccgtggttgtgtgttaacagacaccgca
aaaggtgctgtaagcataatctgtgaaaccgaactctttggtcaacgtatctcacagcaa
cgtcgacgcgaaaaacaaaaacaagttagctcagatgtattagttaaaaacttagccgag
cttaaagtcggccaacctatcgtgcatcttgaacacggtgttgccttataccaaggatta
gagactctcgataccggcggtttagtggccgaatatttaaaactggaatatgccggtggc
gacaaactgtatgttccggtttcttcattgcatttaattagccgttttaacgccagtggt
gatggtgatgcccatttaaataaactgggtaacgaaacctgggccaaagccaagaaaaaa
gccatcgaacgaattcgggatgtagcagcagaattactcgatgtttatgcccgtcgccaa
gctcgtccgggtgaagcgatgaatattgatgaacaagaatacgcacaatttagccaaggt
tttccgtttgaagaaacggtcgatcaagaaagtgctattcatgccgtacttgaagacatg
caagcaccaaccgcgatggatcgtttagtatgcggcgatgtaggttttggtaaaacagaa
gtggccatgcgtgcggcatttgtcgctgttaatgctggtaaacaagtggtggtgttagtg
ccgaccaccttgcttgctcagcaacactacgaaaactttaaagaccgctttgccgattgg
ccgattgttattgaagtcatgtcacgctttagaaccaccaaagaacaaactggtgtggtc
caacagctctcagagggaaaagtcgatattgttatcggtacccataaattactgtcatca
gaagctaacttcgacaacctcggtttactagtcatcgacgaagaacaccgctttggtgtc
cgacaaaaagaaaagataaaagccctacgcgccaatgtcgacattttaaccttaacggcc
acgcctattccgcgtacgcttaatatggccatgtcaggcatgcgagatttatcgattatc
gctacccctccggctaaacggttggcagtaaaaacctttgtccgtgaatatgataaggcc
accgctcgagaagccattttgcgtgaaattttgcgcggcggccaagtatattatttacat
aataatgttgagaccattgaaaaaacggcacaaaatattcgtgaattaattccagaagcc
cgtgtgatcacagcccatgggcaaatgcgcgaacgtgacttagaaaaagtcatgtcagac
ttctatcatcaacgttttaatgttttagtatgtaccactattatcgaaacgggtatcgac
gtacccagtgccaataccatcattatcgaccgagctgacatgttcggtttagcgcaactg
catcaactccgaggtcgtgttggacgttcacatcatcaagcctatgcctatatgatgacc
ccgcatcctaaacgcatgaccgctgacgcacgtaaacgtcttgctgcaatagatgcactt
gaagatcttggcgcaggctttttactggctacccaagatttagaaatccgtggtgctgga
gagttactgggtgatgaacaaagtggtcatatttcaaaaattggcttcagtttatacatg
gaaatgcttgagtctgcggtgaaagccctcaaagaaggtaaagagccttcgctagcctat
atgatgagcgccaaagcagaaattgatttacgtattccggcgttattgccagaagattat
gtcagtgacgtcaacatgcgcttatccttatataaacggattgccaattgcgaaacagaa
gccatgctcgatgagctaaaagtcgaatttattgatcgctttgggatgctaccgactcca
acccgtaatttaatggccattaccttatacaaacatcaagcaaccgcattaggtattgtt
aaaatagaaatgcatgctaaaggtggtagtgtcgaatttggccaggaaaatcatgttgat
ccaatgtttatcattggtttgttgcaaaatcagccacaaatctatcgaatggacgggcca
aataagttaaagttcaacattcctgctgagacaagtaaagagcgtcttgagttaatcaac
accttgcttgaacagtttgctaaacatcaaattttggagactaaatag
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