Shewanella sp. H8: ABIS04_11650
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Entry
ABIS04_11650 CDS
T10623
Name
(GenBank) DEAD/DEAH box helicase
KO
K19789
DNA repair protein RadD
Organism
sheh Shewanella sp. H8
Brite
KEGG Orthology (KO) [BR:
sheh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sheh03400
]
ABIS04_11650
DNA repair and recombination proteins [BR:
sheh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
ABIS04_11650
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
Helicase_C
DEAD
SWI2_SNF2
DUF7577
AAA_30
AAA_16
SLFN-g3_helicase
AAA_22
AAA
DZR
zf-tcix
T1R_D3-like
Zn_Ribbon_1
SNF2-rel_dom
DUF3638
Phage_head_chap
Motif
Other DBs
NCBI-ProteinID:
XBJ47162
LinkDB
All DBs
Position
2688513..2690240
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AA seq
575 aa
AA seq
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MTISLRDYQQQAVDAAVTHFKQSQQSAVLVLPTGAGKSIVIAELARIATGNILVLTHVKE
LVAQNAEKVGLLTQDASIYSAGLKQKKANGKTVVASVQSASRALTKFDQPFSLVIIDECH
RVSNESTSQYQQLLTHLRTKNPNIKLLGLTATPYRLGIGWIYRHHYHGKVGNTDKPIFEK
CIFELPMRPLIKKGYLTQPTIFDGFSAQYDFSSLAPPETNEYPQAEVDNLLHHQGRATTA
IIKQVKQLAVHRQGVLIFAATVRHANEIMMLMNDDAALITAKTPHADRDDIIERFKSKKL
KFIVNVAVLTTGFDAPHVDLIAILRPTASVSLFQQMIGRGLRLAANKTDCLVIDYAANGY
DLFYPEVGQPKPNSKSVPVQVHCPVCQFANTFWGLVDTEGDIIEHFGRRCQGLINDTEQC
DFRFRSKLCPDCGAENDIAARICQQCNSTLIDPDKRLKQVLNAQHHHLFKCQEMLLQDKD
GKLLIQYIDIEGNDFKQSFQFSTKAQQRAFYAVFVLSHTRTPGLPHPHYNTIADVLADKD
RFRKPDLLLLKKNKHRWDLIESFFDYQGKYQIDMS
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgaccattagccttagagattaccaacagcaagctgtagatgccgctgtaacgcatttt
aagcaaagccaacaatcagccgtattagtattacctactggtgcaggtaaaagcatcgtt
attgccgaactggcaagaattgcaactggtaatatattagtgctaacccacgttaaagaa
ttagtggcacaaaatgctgaaaaagttggcctgctgacacaagatgctagtatctattca
gctgggcttaaacaaaaaaaagccaacggcaaaacggttgtcgctagcgttcaatcagcc
tccagagcactaaccaaattcgaccaacctttttcattagttattattgatgaatgtcat
agagtcagtaatgagtcgactagtcaatatcaacagttgcttactcacttacgcactaaa
aatccaaatataaaattacttgggcttactgcgacgccctatagactaggcataggttgg
atatatcgtcatcattatcacggtaaagtcggtaataccgataaaccgatattcgaaaaa
tgtatttttgaattaccgatgcgaccattaatcaaaaaaggctatttaactcagcctact
atttttgatggattcagtgctcaatatgatttcagtagcttagcgccacccgaaaccaat
gaatacccacaagctgaggttgataatttactacatcaccaaggcagagccaccaccgca
atcattaaacaagtcaagcaactagcagtgcaccgccaaggagtacttatctttgccgcg
acggtacgtcatgcaaatgaaataatgatgttaatgaatgatgacgctgctttaataact
gcaaaaacaccacatgcagaccgtgatgacatcattgaacgttttaaatctaaaaagctt
aaatttattgtcaatgttgctgtattaaccacaggttttgatgcgccacacgttgatctt
attgccatacttcgccctacagcatcagtaagcttattccaacaaatgattggccgaggt
ttgcggttggcagcaaataaaactgattgccttgtcattgactacgccgcaaatggttat
gatttattttatcccgaggtgggtcaacctaaacccaacagtaaatcggtcccagtacaa
gtacactgcccggtatgtcaatttgccaacacattttgggggttagtcgatacagaaggt
gacatcattgagcattttgggcgacgctgtcagggccttattaatgatacagagcaatgt
gactttagattcagatctaaactatgtccagactgtggcgccgaaaacgatattgcggcg
cgcatttgccaacagtgtaattcaacgttaattgatccagacaaacgacttaagcaagtg
ttaaatgcacaacaccatcatttatttaaatgccaagaaatgctgctacaggataaagac
ggtaaattattaatccaatatatcgatattgagggtaatgattttaaacaaagttttcag
ttttcaaccaaagcacagcaacgggctttttacgcagtatttgtactcagtcatactcgt
acaccaggattaccacacccacactacaacaccatcgccgacgttttagctgacaaagat
cgctttagaaaacccgatttactactcttaaaaaaaaataaacaccgatgggatttaatc
gaatcattttttgattatcaaggaaaatatcaaatcgatatgagttaa
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