Shewanella sp. H8: ABIS04_12650
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Entry
ABIS04_12650 CDS
T10623
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sheh Shewanella sp. H8
Pathway
sheh03030
DNA replication
sheh03430
Mismatch repair
sheh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sheh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABIS04_12650 (dnaE)
03430 Mismatch repair
ABIS04_12650 (dnaE)
03440 Homologous recombination
ABIS04_12650 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sheh03032
]
ABIS04_12650 (dnaE)
03400 DNA repair and recombination proteins [BR:
sheh03400
]
ABIS04_12650 (dnaE)
Enzymes [BR:
sheh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ABIS04_12650 (dnaE)
DNA replication proteins [BR:
sheh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ABIS04_12650 (dnaE)
DNA repair and recombination proteins [BR:
sheh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ABIS04_12650 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
DUF655
Motif
Other DBs
NCBI-ProteinID:
XBJ47336
LinkDB
All DBs
Position
complement(2921987..2925463)
Genome browser
AA seq
1158 aa
AA seq
DB search
MSDPRFVHLRVHSDYSMSDGVAKVKPIIAAAENQGMAAIALTDQNNFCGLVKFYGACNNA
GIKPIVGADFWVQTPGFEKEFCALTIIAMDNEGYQNLTQLISEAYLRGHVDNRVVIDQDW
LIKFNSGLIILSGAKDGDVGKALLKGNQHQVESLIAFYQQHFEDRYYVELIRTGRAHEER
YLHMAVELASEKGLPVVATNQVVFLKQDDFEAHEIRVAIHDGFTLVDPRRPKTYSDQQYL
RTEDEMIALFADIPSAIQNSVEIAKRCNVTIRLHEYFLPNFPTGDLSIEDFLVTASEKGL
EERLEFLFPDPQVRLEKRPEYDERLEIELKVINQMGFPGYFLIVMEFIQWGKDNDIPVGP
GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE
LYGREAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVERLTKLIPAEPGMTLAKAFEVEPA
LPEAYDGDEDVKELIDMCRRLEGVTRNAGKHAGGVVIAPTRITDFAPLYCDAEGLNPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPRQIKEGKEPVRIEAIPLADPACFRLL
QRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGREE
VSYPDAEYQHESLKELLAPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRGTFKEGAINNGIDGDLSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPS
QFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFKFTVDDDLNIVYGIGAIKG
VGEGPVESILEARKDSPFTDLFDFCARVDLKKLNKRVIEKLILAGALDTLGPHRASMMAT
LPEAISAAAQHAKAEAIGQHDMFGLLNSEPEDSKQNFVQCTQWPDKIWLEGERETLGLYL
TGHPINQYLKELKQYTNGRLKDIHPTERGKTVKAAGLVVATRVMITKRGSKMGLVTLDDK
SARLEVMLFTEPFEKFGHMLEKDRILICEGDVSFDDFSGGNRMNARNIIEIGEARSHFAK
AVEINVHGDDVTPDWLETFEQTLTPWRNGAVPVVINYTKQQASGKIMLGEEWRVNPSDEL
MLALESMLGSTNVKIVFN
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatcctcgttttgttcatttgcgtgtccacagtgattattcaatgtcagatggc
gttgccaaagtgaaacctatcattgcagccgctgaaaatcaggggatggcagcgatagca
ttaaccgatcaaaacaacttctgtggtttggtaaagttttatggtgcttgtaataatgct
ggtattaaacccattgtaggtgccgatttttgggtgcaaactccaggttttgaaaaagag
ttttgtgccttaaccattattgccatggataacgagggttatcaaaatctgactcaattg
atcagtgaagcttatcttcgtggacatgtcgataatagagttgtgatagatcaagactgg
ttaatcaaatttaacagtggtttgatcattctttcaggcgccaaagacggtgacgttggt
aaggcattattaaaaggcaatcaacatcaagttgagtcactgattgctttttatcaacaa
cattttgaagatcgttattatgtagagcttatccgtactggccgtgcacatgaagaacgc
tatttgcacatggcggttgagctagcatctgaaaaagggttgcctgttgtcgccactaac
caagtggtgtttttaaaacaagatgattttgaagctcatgaaattcgtgtcgctattcat
gatggttttaccttagtcgatccgcgtcgtcctaaaacctacagcgatcaacaatacctg
cgcaccgaagacgagatgatcgccttgtttgccgatattccatcggccattcaaaatagt
gtcgaaattgctaagcgctgtaacgtcactattcgcttacatgaatactttttacctaat
ttcccgaccggcgatttatcgatagaagacttcttagttactgcctcagaaaaaggctta
gaagaacgtctcgaatttttattccctgatccgcaagttcgcctcgagaaacggccagag
tatgacgaacgtctcgagattgaactgaaagtgattaaccaaatgggtttcccgggttac
ttccttattgtgatggagtttattcagtggggtaaagacaacgatattccagtcggtcca
ggtcgtggttctggtgcaggttcgttagtggcatacgcactaaaaattactgatttagac
ccacttgaatatgacttactgttcgagcgtttcttgaaccctgaacgtgtatccatgccc
gatttcgacgtcgacttttgtatggaccgccgtgacgaggtaattgatcatgtcgctgaa
ctctatggccgtgaagcggtatcgcaaattattacctttggtaccatggcagcaaaagct
gtggtacgagatgttggccgcgtattaggtcatccatatggctttgttgaacgtctaacc
aaattaatccccgcagaaccagggatgacattggcgaaagcctttgaagttgaacccgcg
cttcctgaagcctatgacggtgatgaagacgttaaagagcttatcgacatgtgtcgccgt
ttagaaggtgtgacacgtaacgcgggtaagcatgccggcggtgtggtaattgcccccact
cgaattacagatttcgcacctttatattgtgacgccgaaggcttgaaccctgttactcag
tttgataaaaacgatgtagaaactgcgggtttggttaagttcgatttcttgggcttacgt
accttaaccattattgattgggcgttgcagatgattaatccgcgccaaattaaagaaggt
aaagaacccgtacgtatcgaagccattccacttgctgatcctgcctgttttagattattg
cagcgctacgaaaccaccgcggtattccagctcgaatctcgtggtatgaaagacttaatt
aaacgtctgcaacccgattgttttgaagacatgattgcactggtagcattgttccgccca
ggtcccttgcagtcaggcatggttgacaactttattgagcgtaagcatggccgtgaagaa
gtttcatatcccgatgctgaatatcagcatgagtctttaaaagaactactagcacccacc
tacggtattattttgtaccaagagcaggtgatgcaaattgctcaggtattgtcaggttac
accctaggcggcgcagatatgctgcgtcgtgcaatgggtaagaaaaaacctgaagaaatg
gccaagcagcgcggcacctttaaagaaggggctattaataacggcatcgacggcgacttg
tcgatgaagatcttcgatttagtagaaaaattcgctggttacggttttaacaaatcgcat
tcagctgcctatgctttggtgtcgtatcaaaccctgtggttaaaaacccatttcccatcg
cagtttatggccgcggtaatgtctgccgacatggacaacaccgataaaattgtcaccttg
gtagatgaatgtgagcgcatgggcttaccgttaattccgccagacgtgaacaaaggctta
tttaaatttactgtcgatgatgaccttaatattgtttacggtattggtgctattaaaggt
gtgggtgaaggccctgtagaatcaattttagaagcacgtaaagacagtccatttaccgac
ttatttgatttttgtgcccgtgtggatttgaaaaagctcaataaacgagtcattgaaaaa
ttaattttagcgggtgccttggacacattaggtccacatcgtgcatcgatgatggcaacg
ttgccagaggccattagtgccgcagcgcaacacgcaaaagcagaagccattggtcagcat
gacatgtttggtttgctcaatagtgagccagaagacagtaagcaaaactttgttcaatgt
acacaatggccggataaaatttggttagaaggcgagcgtgaaaccttagggctttacctt
actggtcatcctatcaaccagtatttaaaagaacttaagcaatacaccaatggccgctta
aaagacattcacccaaccgagcgcggtaaaaccgttaaagcggccgggttagtggtggct
acgcgagtaatgatcactaagcgtggctcaaaaatgggtttagttacgttagatgataaa
agtgcccgtttagaagtgatgttatttaccgaaccgtttgaaaagtttggccacatgctt
gaaaaagatcgcattcttatttgtgaaggtgatgtcagctttgatgatttttctggcggc
aatcgcatgaacgcgcgcaatatcattgaaattggtgaagcgcgcagtcactttgccaaa
gcggtagaaatcaacgttcatggcgatgatgtcacccctgattggctagaaacttttgaa
caaacattaacaccgtggcgtaatggcgccgtgcctgtggtgattaactacaccaaacaa
caagccagtggcaaaatcatgttaggtgaagaatggcgagtgaaccctagtgatgaatta
atgctagcgctagaaagtatgcttggttcaaccaacgtcaaaatcgtgtttaattag
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