Shewanella sp. H8: ABIS04_13055
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Entry
ABIS04_13055 CDS
T10623
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K10943
two-component system, response regulator FlrC
Organism
sheh Shewanella sp. H8
Pathway
sheh02020
Two-component system
sheh02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sheh00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ABIS04_13055
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ABIS04_13055
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
sheh02022
]
ABIS04_13055
02035 Bacterial motility proteins [BR:
sheh02035
]
ABIS04_13055
Two-component system [BR:
sheh02022
]
Other families
FlrB-FlrC (polar flagellar synthesis)
ABIS04_13055
Bacterial motility proteins [BR:
sheh02035
]
Flagellar system
Flagellar assembly proteins
Others
ABIS04_13055
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
HTH_8
AAA_2
AAA_5
HTH_30
Mg_chelatase
AAA
AAA_16
AAA_19
MerR
AAA_14
AAA_3
AAA_22
HTH_24
HTH_50
NPHP3_N
AAA_7
HTH_11
DUF2089
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
XBJ47410
LinkDB
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Position
complement(3021534..3022883)
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AA seq
449 aa
AA seq
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MAEANILLVEDDADLREALLDTLMLAHYDCVDVGSAEEAILALKANHFDIVISDVQMEGI
GGLGLLGYLQQHQPKLPVLLMTAYATIDSAVSAMKLGAVDYLAKPFAPEVLLNQVSRYLP
LKQNHDKPVVADEKSLALLSLAQRVAVSDASVMIMGPSGSGKEVLARFIHQHSQRHDQPF
IAINCAAIPENMLEATLFGYEKGAFTGAYQACPGKFEQAQGGTILLDEISEMELGLQAKL
LRVLQEREVERLGGRKTIKLDVRVLATSNRDLKAMATSGEFREDLYYRINVFPLTWPALH
QRPADILPLARHLLIKHAKAFNMISVPKLDDAATRRLLTHRWPGNVRELDNVIQRALILR
ANDDIGVNDIIIDSADVKLVSTESIDTDKPVDVDGLGDELKAQEHVIILETLNQCQGSRK
MVAEKLGISARTLRYKMAKMRDMGIQLPA
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
gtggctgaagcaaatattctattagttgaggatgacgctgatttacgtgaagcattgctt
gatactctcatgcttgcccattacgactgtgttgatgtcggtagtgccgaagaggcaatt
ttggccttgaaagcaaaccattttgatatagtgattagcgatgtgcagatggaaggcatt
ggtggattgggtttactgggttatttacagcaacatcaacctaaattgccggtattgtta
atgaccgcttatgcgacgattgacagcgctgttagtgcaatgaaattaggcgcagtagat
taccttgctaaaccgtttgcgcctgaagtgttgttgaatcaggtgtcacgttatttaccg
ttaaagcaaaaccacgataaacctgtggttgccgatgagaaaagtttagccttgttgtcg
ctggctcagcgggtagcagtgtcagatgcatcggtcatgattatggggcctagtggttcg
ggtaaagaagtgttggcgcggtttattcaccaacatagtcaacgccatgatcagccgttt
attgcgattaactgcgctgcaataccagaaaacatgttagaagccactttgtttggttat
gaaaaaggcgcatttactggtgcttatcaagcttgccctggtaaatttgaacaagctcaa
ggcggcaccattttacttgatgaaatatccgagatggaacttggcttacaagctaaatta
ctcagggtattacaagaacgcgaagttgagcgtttaggtggtcgcaaaaccattaaacta
gatgtgcgagtactggcaacctcaaatcgagatttaaaagccatggcgacctcgggtgag
tttagagaagatttatactaccgaattaatgtttttccgttaacctggcctgcgctacat
caacgccctgcagatattctacctttggcgcgacacttgctgattaagcatgcaaaagca
tttaatatgatttctgtacctaagcttgatgatgctgctactaggcgtttattaacccat
cgttggccgggtaatgtgcgtgagttagataatgttattcaacgtgcactgatattacga
gctaatgatgatattggcgtcaatgatattattattgactctgccgatgtgaagttggtt
tctacagagagtattgatactgataagcctgttgacgtagacggtttaggcgatgaatta
aaagcccaagagcatgtgattattttagaaacccttaatcaatgtcaggggagtcggaaa
atggtcgcagaaaaactggggatcagtgcccgcacgttacgttataaaatggctaaaatg
cgtgatatggggatccaattacctgcatag
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