Shewanella sp. H8: ABIS04_14220
Help
Entry
ABIS04_14220 CDS
T10623
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
sheh Shewanella sp. H8
Brite
KEGG Orthology (KO) [BR:
sheh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sheh03016
]
ABIS04_14220 (truB)
Enzymes [BR:
sheh01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
ABIS04_14220 (truB)
Transfer RNA biogenesis [BR:
sheh03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
ABIS04_14220 (truB)
Prokaryotic type
ABIS04_14220 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
XBJ47625
LinkDB
All DBs
Position
complement(3293456..3294409)
Genome browser
AA seq
317 aa
AA seq
DB search
MARRPKGRFIDGIVLLDKDTGMSSNFALQRVKRFFNANKAGHTGALDPLATGMLPICLGE
ATKFSQHLLDSDKRYLVTAKLGQRTDTSDSDGEIVQTRPVNVTQALLDEKLAFFRGTTQQ
IPSMYSALKYQGQPLYKYAREGIEVPRESRPITVFELNFIKLEGDELTLDIHCSKGTYIR
TIIDDLGEMLGCGAHVIMLRRTQVAEYPYEKMVTLAQLEALVEQSHRQDVAPQTLMDPLL
LPMDTAVAKFAEINLPDEMLYYVMQGQAIQAAGLKPEELVRITIGDSHRFVGMGIMNDDG
LLAPKRLIVIHDNDPAE
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atggctcgtcgccctaaaggtcgcttcatcgacggtatagtgttactcgataaagatact
ggcatgagctctaattttgccctgcaaagagttaagcgtttttttaatgccaataaagcc
ggccatacaggtgctttagatccgttagcaacaggtatgttgcctatttgtctcggagaa
gcaactaagttctctcagcatttattagattcggataagcgctacctagtgacggctaaa
ttgggtcaacgtactgatacgagtgattctgatggggaaatcgtgcaaacgcgtcccgtt
aatgttactcaagcattacttgatgaaaagctcgcattttttcgaggaaccactcagcaa
ataccttcaatgtattcggcattaaaataccaaggtcaacctttgtataaatatgctcgt
gaggggattgaagttccacgtgagtcgcgacctattactgtatttgagcttaattttatt
aagcttgaaggtgatgaattaaccctagacattcattgttctaaagggacttacatacgt
accattattgatgatttaggtgaaatgcttggctgtggagcacatgttattatgttgcga
cgtactcaagttgccgaatatccgtatgaaaaaatggtaacgttagcgcaattagaagcg
ttagttgagcaatcccatagacaagatgttgcgcctcagacattgatggatccattatta
ttaccaatggatacagctgtggctaaatttgctgaaattaacttgccagacgagatgtta
tattacgttatgcaaggacaagcaatccaagctgcgggacttaagcctgaagaattagtg
cgtattactattggtgattcacatcgatttgttggtatgggcatcatgaatgatgatggt
ctattagcacctaaacggttgattgtaattcacgataatgatcctgcagagtag
DBGET
integrated database retrieval system
