Shewanella sp. H8: ABIS04_16695
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Entry
ABIS04_16695 CDS
T10623
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sheh Shewanella sp. H8
Pathway
sheh03420
Nucleotide excision repair
sheh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sheh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ABIS04_16695 (uvrD)
03430 Mismatch repair
ABIS04_16695 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sheh03400
]
ABIS04_16695 (uvrD)
Enzymes [BR:
sheh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABIS04_16695 (uvrD)
DNA repair and recombination proteins [BR:
sheh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABIS04_16695 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
ABIS04_16695 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
XBJ48078
LinkDB
All DBs
Position
complement(3834448..3836631)
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AA seq
727 aa
AA seq
DB search
MDVSSLLDGLNDKQREAVGAPLSNMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAV
TFTNKAAAEMRERVEKVVGTNMGRMWIGTFHGLAHRLLRTHYQDANLPQSFQIIDSDDQL
RLLKRILKSLNLDEKQYPPRQAQGYINGKKDQGLRPKHIDAGGFPIEQNLLNIYKIYQES
CDRAGLVDFAEILLRAHELWLNKPHLLAHYQERFRHILVDEFQDTNAIQYAWIRVLAGKT
ANVMIVGDDDQSIYGWRGAQIENLHRFLKDFDGATTIRLEQNYRSTANILNASNAVISNN
PDRLGKELWTEDKDGEPISVYCAFNETDEAKFIVGRISDWQEKGGSLSECAILYRSNAQS
RVLEEAFLHKGLAYRIYGGLRFFERQEIKDAMGYMRLINNKDDDAAFERVVNTPARGIGD
RTLDIVRSTARQQQLTLWQACVHLVEEKVLAGRAANAINGFMELIISMRTDTADMLLYRM
ADDVIDRSGLRTMYEAEKGEKAQARIENLNELVTAARSFEMPEELEDMGELNAFLSHAAL
EAGEGQADAFTDAVQLMTLHSAKGLEFPMVFMAGVEEGLFPSKMALDEGDRLDEERRLCY
VGMTRAMQKLYISYAESRRIYGREDYASPSRFINEIPEKFVEQIRIRAQVKPSISKRFAA
RPATVTTKPNGFNDTGYRVGSKVKHFKFGEGKVINFEGSGEKGRVQVDFVDFGCKWLLVS
LAKLEHC
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggacgtatcatcattattagacggcctaaacgataagcagcgtgaggcagttggcgca
ccactttcaaatatgttggtgttagcgggtgccggcagtggtaaaacccgagtattaacc
caccgtatagcgtggttaatgcaagttgaacaacaaagtccatattctattttggcagtc
acctttaccaataaagccgcggcagaaatgcgtgaacgggtggaaaaggtcgtgggtact
aacatgggacgcatgtggataggtaccttccacggtttagcccatcggttattacgcact
cattatcaagatgccaatttaccgcaaagcttccagattattgattctgacgatcagttg
cgtttgttaaaacgtattctaaaaagccttaatttagatgagaagcagtatcctccgcgt
caagctcagggttatatcaatggtaagaaagatcaaggtcttcgccctaagcatatcgat
gcaggcgggtttccgattgagcaaaacttactgaatatttataaaatctaccaagaatct
tgtgatcgtgcaggtttggtcgattttgctgaaatcctattacgtgcgcatgagttatgg
ttgaataaaccgcatttattggcacattatcaagagcgttttcgtcatattttagtagat
gagtttcaagatactaacgcgatacaatatgcgtggatccgtgtgttagcgggcaaaacg
gctaatgtgatgattgtcggtgatgacgatcaatccatttatggctggcgtggtgcgcaa
attgaaaacctccatcgtttcttaaaagattttgacggtgcaacaacgattcgtttagaa
caaaattaccgttcaacggcgaatattttgaatgcctctaacgctgtgatttctaataac
ccagatcgcttgggcaaagagttatggactgaagacaaagatggcgagcccatttctgtt
tattgcgcctttaatgagacggacgaagccaagttcattgtgggtcgcattagcgattgg
caggaaaaaggcggtagtttgagcgagtgcgcgattttatatcgttcaaatgcgcaatcg
cgagtattagaagaagcctttttacacaaagggttagcttaccgtatttacggtggtctg
cgcttcttcgagcgtcaagaaattaaagatgcaatgggctatatgcgtcttatcaataat
aaagatgatgatgccgcattcgaacgtgtggtgaataccccagctcgtggtattggtgat
cgcactttagatattgtgcgctcaacagccagacagcaacagctaacactttggcaagcc
tgtgtgcatttagttgaagaaaaagtactagctgggcgtgcagctaatgccatcaatggc
tttatggaactgattatctcgatgcgtactgatactgcagatatgttgttgtatcggatg
gctgatgatgtgattgaccgttcaggtttgcgtaccatgtacgaggctgaaaagggcgaa
aaagcccaagcgcgaattgaaaacttaaatgagttagttactgcagcgcgcagtttcgaa
atgcctgaagaacttgaagacatgggcgagcttaatgcctttttatctcatgcagcatta
gaagctggcgaaggtcaggctgatgcctttaccgatgcagtgcaattgatgacgttacat
tcggccaaaggacttgagtttccaatggtgtttatggcgggtgttgaggaaggattattc
ccgagcaagatggcactagatgaaggcgatcgtttagatgaagagcgtcgtttatgttat
gtcggaatgacccgtgcaatgcagaaactgtacatcagttatgctgagtcccgtcgtatt
tatggccgtgaagattatgctagcccatcacgatttattaacgaaattcctgaaaaattc
gttgaacaaattcgcatacgtgctcaggtgaagccatcgatcagcaaacgctttgctgct
cgtcctgcgacggtcactaccaagccgaatggttttaatgatactggttatagagttggc
tctaaagtgaagcattttaagtttggtgaaggcaaggtgattaactttgaaggctctggt
gaaaaaggccgtgtgcaggttgattttgtcgatttcggctgcaaatggttgttggtgtcg
ttagcaaaattagagcactgttaa
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