Shewanella sp. H8: ABIS04_19080
Help
Entry
ABIS04_19080 CDS
T10623
Symbol
rfaD
Name
(GenBank) ADP-glyceromanno-heptose 6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
sheh Shewanella sp. H8
Pathway
sheh00541
Biosynthesis of various nucleotide sugars
sheh01100
Metabolic pathways
sheh01250
Biosynthesis of nucleotide sugars
Module
sheh_M00064
ADP-LDmanHep biosynthesis, sedoheptulose-7P => ADP-LDmanHep
Brite
KEGG Orthology (KO) [BR:
sheh00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
ABIS04_19080 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
sheh01005
]
ABIS04_19080 (rfaD)
Enzymes [BR:
sheh01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
ABIS04_19080 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
sheh01005
]
Core region
ABIS04_19080 (rfaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
RmlD_sub_bind
NAD_binding_4
Polysacc_synt_2
NAD_binding_10
Tudor_4
Motif
Other DBs
NCBI-ProteinID:
XBJ48515
LinkDB
All DBs
Position
4373730..4374683
Genome browser
AA seq
317 aa
AA seq
DB search
MIVVTGAAGFIGSNLVKQLNAMGRNDIIAVDDLTDGTQMFNLADCEIADYLDKDDFIRQI
QAGDFDNKLEVIFHQGACSSTTEWDGKFMMANNYEYSKILLHYSQANNCQFIYASSASVY
GGSEKFIERRELEKPLNVYAYSKFLFDQYVRQQKLTGQVAGLRYFNVYGPREQHKGGMAS
VAFHFNNQINANGVCRLFEGVDGYENGQQLRDFVFVEDVVKVNLWLWQNPSVSGIYNCGT
GQAQSFNDVANAVIAYHGKGHIEYIPFPEKLKGAYQSYTQADLTQLRTAGYQAEFKTVEQ
AVPEYLDWIKNQHFIGQ
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atgatagtggttacaggcgcagcagggtttattggtagtaatttagttaaacaacttaat
gccatgggccgaaatgacattatcgccgttgacgatttaaccgacggcactcagatgttc
aatttagccgattgtgaaattgccgattatctcgataaagatgatttcatcaggcaaatt
caagcgggcgattttgataacaaacttgaagtcattttccatcaaggcgcttgctcatca
accactgagtgggatggcaagttcatgatggccaataactacgagtattcaaagatatta
ttgcattacagccaagccaataactgccaatttatttatgcttcttctgcatctgtttat
ggtggcagcgaaaagtttattgagcgacgtgaacttgaaaagccactcaatgtctacgct
tactctaagttcttatttgatcaatatgtaagacagcaaaaactcactggccaagtggct
gggttacggtatttcaacgtctatggtccacgggaacaacataaaggcggcatggccagt
gtggctttccactttaataaccaaattaacgccaatggtgtgtgtcgtttgtttgaaggt
gttgatggttatgaaaatggtcagcaacttcgtgactttgtgtttgttgaagatgtggtt
aaagtcaatttatggctatggcagaacccatccgtatcgggaatatataactgcggtact
ggtcaagcacaaagcttcaatgatgttgccaatgctgtcattgcgtatcatggtaaaggg
cacattgagtacattcctttccctgagaagcttaaaggtgcttatcagagttatactcaa
gcagacttgacccaattaagaactgctggttatcaagctgagtttaaaacggttgaacaa
gctgtaccagaatatttagattggattaaaaaccaacactttattggtcaataa
DBGET
integrated database retrieval system
