Shewanella sp. H8: ABIS04_19150
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Entry
ABIS04_19150 CDS
T10623
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sheh Shewanella sp. H8
Pathway
sheh03030
DNA replication
sheh03410
Base excision repair
sheh03420
Nucleotide excision repair
sheh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sheh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABIS04_19150 (polA)
03410 Base excision repair
ABIS04_19150 (polA)
03420 Nucleotide excision repair
ABIS04_19150 (polA)
03440 Homologous recombination
ABIS04_19150 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sheh03032
]
ABIS04_19150 (polA)
03400 DNA repair and recombination proteins [BR:
sheh03400
]
ABIS04_19150 (polA)
Enzymes [BR:
sheh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ABIS04_19150 (polA)
DNA replication proteins [BR:
sheh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABIS04_19150 (polA)
DNA repair and recombination proteins [BR:
sheh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
ABIS04_19150 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABIS04_19150 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
WH_GTF3C1_N
Motif
Other DBs
NCBI-ProteinID:
XBJ48529
LinkDB
All DBs
Position
4387936..4390692
Genome browser
AA seq
918 aa
AA seq
DB search
MPIIPNNPLILVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVVNMLRSLLSRYSPSHIAV
VFDAKGKTFRNDMYGEYKAQRPPMPDDLRTQIEPLHRIIHAMGLPLICISGVEADDVIGT
IALQASKEGRATLISTGDKDMAQLVNEHVTLINTMTDTIMGPEEVKTKYGVSPDRIIDFL
ALMGDKSDNIPGLPGVGEKTALAMLTGMGSVENILADPQSVIDVGFRGSKTMPAKIIDNA
DMLKLSYKLATIKTDVELEQDWHELNVKPQDRDELIKCYSEMEFKRWLAEVLDNKQPHGT
ISTDSDEEITVSPIIEAEYETILTVEALDKWIEKLSSAELISVDTETTSLNYMEAELVGI
SFTTEVGKAAYLPLAHDYLDAPKQIDKAIALEKLRPILESDTPQKVGQNLKYDISILANA
GITLKGVRFDTMLESYVFNSVASRHDMDGLALKYLGHKNISFEDVAGKGAKQLTFNQVHL
DVAGPYAAEDADITLRLHQHLWPRLEKEPELASVFNELELPLIQILSDVERQGVLIDSML
LSQQSVELAKKLDDLENKAYEIAEEKFNLASPKQLQTLFFEKLGYPVKKKTPKGAPSTSE
EVLVELALDYPLPKIILQHRSLAKLKSTYTDKLPLMVNATTGRVHTSYHQANAATGRLSS
SDPNLQNIPIRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGK
DIHKATAAEVFGVHFEEVTTEQRRRAKAVNFGLIYGMSAFGLAKQLDIPRNEAQTYIDTY
FARYPGVLKYMEETRAIAAELGYVSTLFGRRLYLPEIRDRNAMRRQAAERAAINAPMQGT
AADIIKKAMILIHQWITQETQGEITMIMQVHDELVFEVDEAQAEALKIKMCDLMAQAASL
DVTLLAEAGIGDNWDQAH
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgccaattattcctaataacccgctcatccttgttgatggctcatcttatctttatcgc
gcttattatgcgccgcctcatttaactaattcaaaaggtgaagcaacaggcgcggtttat
ggtgttgttaatatgcttcgtagcttattaagccgttatagtcctagtcatattgctgtc
gtttttgatgcgaaaggcaaaacctttcgcaacgatatgtatggtgagtacaaagcccag
cgcccaccgatgcctgatgatttgcgtactcaaatagaaccattacacagaatcattcac
gcaatgggtttgcctttgatctgcatttcgggtgttgaagcggatgatgtgatcggcacc
atcgcccttcaagcgagtaaagaaggccgtgcgacactaatcagtactggcgataaagac
atggctcaactagtgaatgagcatgtcacattaatcaatactatgactgacaccattatg
ggccctgaagaggtcaaaacgaagtacggtgtcagcccagatagaataatcgacttttta
gcactaatgggtgataaatcagacaatattccagggttacctggcgtcggtgaaaaaacc
gcattagccatgctcaccggcatgggaagtgtagaaaatatcttagcggatccgcaaagc
gtcattgatgtcggctttagaggctcaaaaaccatgccggctaaaattatcgacaacgcc
gacatgctaaaactatcttacaaactcgccaccatcaaaaccgatgttgaattagaacaa
gattggcatgagcttaacgttaagccccaagatcgagatgaactgattaaatgttattct
gaaatggagttcaaacgttggttagctgaagtattagataataaacaacctcacggcacc
atcagtacagatagcgatgaagagatcacagtatcacctatcattgaagctgaatacgaa
acaatcctgactgtagaagcactcgataaatggattgaaaaactcagtagcgccgaactt
atttctgttgatactgaaaccaccagtctcaattacatggaagctgaacttgtcggcata
tcatttacaaccgaagttggcaaagcggcctatttaccgttagcgcatgattacctagat
gcaccaaagcaaattgataaagccattgctcttgaaaaactgcgcccgatccttgaaagc
gatactccacaaaaagtgggacaaaacttaaaatacgatatcagtattttagccaacgca
ggtatcaccctaaaaggcgtccgttttgataccatgctcgaatcctatgtgtttaattca
gtggcatcacgtcacgatatggatggtttagccctcaaataccttggacacaaaaacatt
agcttcgaagatgttgctggcaaaggcgcaaaacaactcactttcaaccaagttcacctt
gatgtcgccggaccttatgccgctgaagatgccgatatcactctgcgtttacatcaacat
ctatggccaaggcttgaaaaagaacctgagttagccagtgtatttaatgagttagaacta
ccattaattcaaatattatccgacgttgagcgccaaggtgtattaatcgactcaatgtta
ctgagccaacaaagtgttgaattagccaaaaagctggatgatcttgaaaacaaagcctat
gaaatagcggaagagaagtttaatttagcttcacctaaacagttgcaaaccctatttttt
gaaaaactaggttatccagtaaagaagaaaaccccaaaaggggcaccatcaacatcagaa
gaagtgttagttgaactagcactagattaccctttacctaaaatcatcctacaacaccgt
agtttagccaaactaaaaagcacttataccgataagctaccgcttatggtcaatgctacg
acgggtcgagttcataccagttaccaccaagctaatgctgccaccgggcgtttatcatca
agcgatccaaacttacaaaatattccaatccgtactgaagaaggtcgccgtattcgccaa
gcctttatcgctccggcaggacgtaagattttagcagccgattactcacaaattgaactg
cggatcatggctcatttgtctcaagatgcaggtttacttaaagcctttgctgaaggtaaa
gacattcataaagccacagcagccgaagtctttggggtacattttgaagaagtgaccaca
gaacaacgtcgtcgcgccaaagcagttaactttggtttaatttatggtatgtctgcgttt
ggtttagctaagcaattggatattccacgtaacgaagcgcaaacctacatagatacttat
tttgcacgctatcccggtgtcctaaaatacatggaagaaactcgagccatcgcagctgag
ttaggttatgtctctacattattcggacgacgtttatacttaccagaaatccgcgatcgt
aatgcaatgcgtcgccaagcggccgaacgagcggcaattaacgcaccaatgcaaggtacg
gcggctgacatcattaaaaaagccatgatactcattcatcagtggatcacccaagagact
caaggtgaaattacaatgataatgcaggtacacgatgaattagtgtttgaagtggatgaa
gctcaagctgaagcgctcaaaatcaaaatgtgcgatttaatggcacaagcggcatcatta
gacgtaaccttattggcagaggctggaattggcgacaattgggatcaagcccactaa
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