Shewanella sp. JNE2: MZ182_00240
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Entry
MZ182_00240 CDS
T08546
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
shej
Shewanella sp. JNE2
Pathway
shej03030
DNA replication
shej03410
Base excision repair
shej03420
Nucleotide excision repair
shej03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shej00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MZ182_00240 (polA)
03410 Base excision repair
MZ182_00240 (polA)
03420 Nucleotide excision repair
MZ182_00240 (polA)
03440 Homologous recombination
MZ182_00240 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shej03032
]
MZ182_00240 (polA)
03400 DNA repair and recombination proteins [BR:
shej03400
]
MZ182_00240 (polA)
Enzymes [BR:
shej01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
MZ182_00240 (polA)
DNA replication proteins [BR:
shej03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MZ182_00240 (polA)
DNA repair and recombination proteins [BR:
shej03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
MZ182_00240 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MZ182_00240 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
Motif
Other DBs
NCBI-ProteinID:
UPO31324
LinkDB
All DBs
Position
complement(57066..59834)
Genome browser
AA seq
922 aa
AA seq
DB search
MPTIANNPLVLVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVVNMLRSLLSRYQPSHIAV
VFDAKGKTFRNDMYSEYKAQRPPMPDDLRSQIEPLHRIIHALGLPLISIPGVEADDVIGT
IARQASRENRAVLISTGDKDMAQLVDENITLINTMTDTIMGPDEVAEKYGVGPDRIIDFL
ALMGDKADNIPGLPGVGEKTALAMLTGAGSVANLLAAPEKVSDLGFRGAKTMAAKIIENA
DMLRLSYELATIKTDVELEQDWHELTAKPADRDELIKCYSEMEFKRWLAEVLDNKAPTTV
VADAAKVETQESSMPNPALETQYDTILTEAQLDEWIAKLKQASLIAVDTETTSLDYMVAE
LVGMSFAVEAGKAAYLPLAHDYVGAPQQLDKQFALEKLRPILEDDKVKKVGQNLKYDISV
LANAGIKLQGVVFDTMLESYVFNSVASRHDMDGLALKYLGHKNIGFEDIAGKGAKQLTFN
QIPLEVAAPYAAEDADITLRLHQHLWPRLEKEPQLASVFTEIELPLIQVLSDIERQGVLI
DSMLLGQQSDELARKIDTLEEKAYEIAGEKFNLGSPKQLQVLFFEKLGYPITKKTPKGAP
STAEEVLVELALDFPLPKVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANAATG
RLSSSEPNLQNIPIRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLKAF
AEGKDIHRATAAEVFGTNFDAVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRNEAQTY
IDTYFARYPGVLRYMEETRAGAAELGYVSTLFGRRLYLPEIRDRNAMRRQGAERAAINAP
MQGTAADIIKKAMINIAQWIKTETQGEIAMIMQVHDELVFEVDADKAETLKQKVCELMAK
AAILDVALLAEAGIGDNWDEAH
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgcctaccattgcaaacaacccacttgtccttgtggatggatcttcttatttataccgc
gcctattatgcgcctcctcacctgacaaactcaaagggcgaagcaacgggtgccgtctat
ggcgtagtaaatatgttacgcagtctattgagccgttaccaaccgagccatatcgccgtc
gtattcgatgccaaaggtaaaaccttccgtaatgatatgtacagcgaatacaaagcacag
cgcccaccgatgccggatgatcttcgttcacaaatcgaacctctgcataggattattcac
gcccttggtttaccccttatctctatccctggcgttgaagcggatgatgttatcggcaca
attgcccgccaagcaagccgtgagaatcgcgccgtactcattagtacaggtgataaagat
atggcccaattggttgatgaaaatatcacgctgatcaataccatgacagataccatcatg
gggcccgatgaagttgcagaaaaatatggtgtaggtccagatcgtattattgatttctta
gccttgatgggcgataaggccgataatattcctggcttacctggtgtcggcgaaaaaacg
gcattagctatgctgactggtgcaggaagcgtggccaacctactcgcagctcccgaaaag
gtctctgacttaggcttcaggggcgcaaaaacgatggcggcaaaaatcattgaaaatgcc
gacatgcttagactctcctacgaacttgctaccattaaaaccgatgtggaacttgagcaa
gattggcatgagctcactgccaaacccgcagatagagacgaactgatcaaatgctacagc
gagatggagtttaagcgctggcttgccgaggtcttagataataaagcaccaacgaccgta
gtcgcggatgcggctaaagtcgaaacccaagaaagctctatgccaaatcctgcacttgaa
actcaatacgacacgattttaaccgaagctcagcttgatgaatggattgccaagctgaaa
caagcatcattaatagccgtggatacagagaccacgagtctcgactatatggtcgccgaa
ctggttggcatgtctttcgctgtggaagcaggcaaagccgcttacctgcctttagctcac
gattatgttggcgcgcctcaacagttagataagcaatttgcgctcgaaaaactacgcccc
attttagaagacgacaaggtcaaaaaagtcggccagaacctgaaatatgacatcagcgtt
ttggctaatgcgggcattaaattacagggtgtcgtatttgataccatgctcgaatcctat
gtttttaactccgtggcttcacgccatgatatggatggattagcgctcaagtatctaggc
cataaaaacattggctttgaagatattgcaggcaaaggggcgaaacaacttaccttcaat
caaatcccgttggaagttgcagccccgtatgctgcggaggatgcggatattactctgcgt
ttacaccagcacctatggccaaggctagaaaaagaacctcaattggcctcagtatttact
gaaattgaattacccttaatccaagtactatcagacattgagcgccaaggtgtattaatt
gatagcatgttactcggccaacagagtgatgagctagcgcgtaaaatcgataccttagaa
gaaaaagcctacgagattgcaggtgaaaaatttaatctcggttcacccaaacaactgcaa
gtgctattttttgaaaaactaggttatccaatcaccaaaaaaacaccaaagggcgcgcca
tcgaccgcggaagaagtattagtcgaattagccttagatttcccactgccaaaggtgatc
ctcgagcatcgcagcctatctaagttaaaaagtacttacacagataaactaccgctgatg
gtcaatgccaagactgggcgcgttcacacaagttaccaccaagctaatgcggcaacaggg
cgcttatcgtcaagcgagcctaacctgcagaatattcctattcgtaccgaagaaggtcgc
cgcattcgccaagcctttatcgcccctgcaggccgtaaaattttggccgctgattactca
caaatcgaactgcggatcatggcacatctatcccaagatgcgggtctactcaaagccttc
gccgagggtaaagacattcacagagccaccgctgccgaagtatttggaactaactttgat
gctgtaacaacagaacagcgacgccgcgctaaagccgtaaacttcggccttatttatggt
atgtcagcctttggtttagctcgtcaactggatattcctcgtaacgaagctcaaacctat
attgatacttacttcgcccgctacccgggagtgttaaggtatatggaagaaacgcgcgca
ggagcagcagaattaggatatgtttcaacactatttggtcgtcgcctctacttgcccgaa
atccgggatcgtaatgcaatgcgccgccaaggcgcagaacgtgctgcgattaacgcaccg
atgcaaggcacggctgccgatatcatcaaaaaagccatgatcaatattgcccagtggatc
aagacagaaacccaaggcgaaatcgccatgattatgcaagtccacgacgaattagtattc
gaagtcgatgccgataaagcagagacgctcaaacaaaaagtatgtgaactcatggcgaag
gctgcaatcctcgatgtagcattactcgcagaagctggcattggtgataattgggatgaa
gcccactaa
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